Variant report

Variant	rs509530
Chromosome Location	chr11:75422306-75422307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2508390	1.00[CEU][hapmap];0.86[CHD][hapmap];0.83[MEX][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2510630	0.96[EUR][1000 genomes]
rs2510633	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs534299	1.00[CEU][hapmap];0.88[CHD][hapmap];0.83[MEX][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs555939	1.00[CEU][hapmap];0.88[CHD][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs624580	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs624636	0.84[ASN][1000 genomes]
rs631058	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs636491	1.00[CEU][hapmap];0.88[CHD][hapmap];0.83[MEX][hapmap];1.00[EUR][1000 genomes]
rs653229	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs695155	1.00[CEU][hapmap];0.85[CHD][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75417800-75423800	Weak transcription	Colonic Mucosa	Colon
2	chr11:75417800-75424000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:75422200-75423200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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