Variant report

Variant	rs695155
Chromosome Location	chr11:75427612-75427613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:75427500-75427650	GM12864	blood:	n/a	n/a
2	CTCF	chr11:75427500-75427650	MCF-7	breast:	n/a	n/a
3	CTCF	chr11:75427500-75427650	GM12869	blood:	n/a	n/a
4	CTCF	chr11:75427500-75427650	HepG2	liver:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:75427562-75427612	Hepatocyte	liver:	n/a
2	chr11:75427562-75427612	CMK	blood:	n/a
3	chr11:75427562-75427612	GM06990	blood:	n/a
4	chr11:75427562-75427612	A549	lung:	n/a
5	chr11:75427562-75427612	U87	brain:	n/a
6	chr11:75427562-75427612	HCT-116	colon:	n/a
7	chr11:75427562-75427612	SKMC	muscle:	n/a
8	chr11:75427562-75427612	IMR90	lung:	fetal
9	chr11:75427562-75427612	ovcar-3	ovarian:	n/a
10	chr11:75427562-75427612	K562	blood:	n/a
11	chr11:75427562-75427612	HRCEpiC	kidney:	n/a
12	chr11:75427562-75427612	HepG2	liver:	n/a
13	chr11:75427562-75427612	PrEC	prostate:	n/a
14	chr11:75427562-75427612	AG09309	skin:	n/a
15	chr11:75427562-75427612	AG09319	gingival:	n/a
16	chr11:75427562-75427612	HCF	heart:	n/a
17	chr11:75427562-75427612	PANC-1	pancreas:	n/a
18	chr11:75427562-75427612	HNPCEpiC	eye:	n/a
19	chr11:75427562-75427612	T-47D	breast:	n/a
20	chr11:75427562-75427612	ECC-1	luminal epithelium:	n/a
21	chr11:75427562-75427612	MCF10A-Er-Src	breast:	n/a
22	chr11:75427562-75427612	SAEC	small airway:	n/a
23	chr11:75427562-75427612	GM12891	blood:	n/a
24	chr11:75427562-75427612	MCF-7	breast:	n/a
25	chr11:75427562-75427612	HEEpiC	esophagus:	n/a
26	chr11:75427562-75427612	SK-N-MC	brain:	n/a
27	chr11:75427562-75427612	HRE	kidney:	n/a
28	chr11:75427562-75427612	HCPEpiC	choroid plexus:	n/a
29	chr11:75427562-75427612	HUVEC	blood vessel:	n/a
30	chr11:75427562-75427612	H1-hESC	embryonic stem cell:	embryo
31	chr11:75427562-75427612	HIPEpiC	eye:	n/a
32	chr11:75427562-75427612	AG04449	skin:	fetal
33	chr11:75427562-75427612	RPTEC	kidney:	n/a
34	chr11:75427562-75427612	BE2_C	brain:	n/a
35	chr11:75427562-75427612	Hela-S3	cervix:	n/a
36	chr11:75427562-75427612	NT2-D1	testis:	n/a
37	chr11:75427562-75427612	AG04450	lung:	fetal
38	chr11:75427562-75427612	GM12878	blood:	n/a
39	chr11:75427562-75427612	NH-A	brain:	n/a
40	chr11:75427562-75427612	NB4	blood:	n/a
41	chr11:75427562-75427612	BJ	skin:	n/a
42	chr11:75427562-75427612	NHDF-neo	bronchial:	n/a
43	chr11:75427562-75427612	SK-N-SH	brain:	n/a
44	chr11:75427562-75427612	PFSK-1	brain:	n/a
45	chr11:75427562-75427612	AoSMC	blood vessel:	n/a
46	chr11:75427562-75427612	HCM	heart:	n/a
47	chr11:75427562-75427612	HAEpiC	amniotic membrane:	n/a
48	chr11:75427562-75427612	HPAEpiC	pulmonary alveolar:	n/a
49	chr11:75427562-75427612	HL-60	blood:	n/a
50	chr11:75427562-75427612	ProgFib	skin:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75285840..75288464-chr11:75427024..75428606,2	K562	blood:
2	chr11:75426632..75428756-chr11:75430160..75432998,2	K562	blood:

No data

Variant related genes	Relation type
MOGAT2	TF binding region
MOGAT2	CpG island
ENSG00000166391	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2508390	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2510630	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2510633	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs509530	1.00[CEU][hapmap];0.85[CHD][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs534299	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs555939	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs624580	0.92[EUR][1000 genomes]
rs624636	0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs631058	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs636491	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs648618	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs653229	1.00[CEU][hapmap];0.83[CHD][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75424000-75428200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr11:75426600-75428600	Enhancers	Fetal Intestine Small	intestine
3	chr11:75427000-75428400	Enhancers	Duodenum Mucosa	Duodenum
4	chr11:75427200-75428200	Enhancers	Colonic Mucosa	Colon
5	chr11:75427200-75428600	Enhancers	Fetal Intestine Large	intestine
6	chr11:75427200-75428600	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr11:75427200-75429400	Enhancers	HepG2	liver
8	chr11:75427600-75427800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
9	chr11:75427600-75428000	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr11:75427600-75428400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr11:75427600-75428600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
12	chr11:75427600-75429000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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