Variant report

Variant	rs624636
Chromosome Location	chr11:75419272-75419273
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2508390	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2510630	0.90[AMR][1000 genomes]
rs2510633	0.98[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs509530	0.84[ASN][1000 genomes]
rs534299	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs555939	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs624580	0.83[ASN][1000 genomes]
rs631058	0.98[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs636491	0.98[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs648618	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs653229	0.84[ASN][1000 genomes]
rs695155	0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75417800-75423800	Weak transcription	Colonic Mucosa	Colon
2	chr11:75417800-75424000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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