Variant report

Variant	rs631058
Chromosome Location	chr11:75414073-75414074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2508390	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2510630	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2510633	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs509530	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs534299	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs555939	1.00[CEU][hapmap];0.80[CHB][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs624580	0.92[EUR][1000 genomes]
rs624636	0.98[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs636491	1.00[CEU][hapmap];0.80[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs648618	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs653229	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs695155	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75410200-75417000	Weak transcription	Fetal Intestine Large	intestine
2	chr11:75412000-75417200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:75412200-75416600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:75412200-75417200	Weak transcription	Adipose Nuclei	Adipose
5	chr11:75412400-75417200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:75412400-75417200	Weak transcription	Fetal Heart	heart
7	chr11:75413200-75414200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:75413400-75417200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:75413600-75414200	Enhancers	GM12878-XiMat	blood
10	chr11:75413600-75417400	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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