Variant report

Variant	rs648618
Chromosome Location	chr11:75426599-75426600
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2508390	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2510633	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs534299	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs555939	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs624636	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs631058	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs636491	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs695155	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75424000-75428200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr11:75424800-75427200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:75425000-75426600	Weak transcription	Fetal Intestine Small	intestine
4	chr11:75425000-75427000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:75425000-75427200	Weak transcription	Colonic Mucosa	Colon
6	chr11:75425400-75426600	Weak transcription	Fetal Intestine Large	intestine
7	chr11:75425600-75427200	Weak transcription	HepG2	liver
8	chr11:75426200-75426800	Weak transcription	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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