Variant report

Variant	rs555939
Chromosome Location	chr11:75428766-75428767
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2508390	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2510630	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2510633	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs509530	1.00[CEU][hapmap];0.88[CHD][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs534299	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs624580	0.92[EUR][1000 genomes]
rs624636	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs631058	1.00[CEU][hapmap];0.80[CHB][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs636491	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs648618	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs653229	1.00[CEU][hapmap];0.85[CHD][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs695155	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75427200-75429400	Enhancers	HepG2	liver
2	chr11:75427600-75429000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:75428000-75428800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
4	chr11:75428000-75429600	Enhancers	Liver	Liver
5	chr11:75428200-75429000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
6	chr11:75428200-75431200	Enhancers	Gastric	stomach
7	chr11:75428400-75429400	Active TSS	Colonic Mucosa	Colon
8	chr11:75428600-75429000	Active TSS	Fetal Intestine Large	intestine
9	chr11:75428600-75429000	Flanking Active TSS	Fetal Intestine Small	intestine
10	chr11:75428600-75429000	Active TSS	Rectal Mucosa Donor 31	rectum
11	chr11:75428600-75429200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:75428600-75430200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:75428600-75430600	Active TSS	Duodenum Mucosa	Duodenum
14	chr11:75428600-75431000	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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