Variant report

Variant	rs533518164
Chromosome Location	chr6:1911335-1911336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:1687705..1689318-chr6:1909899..1912443,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530548	chr6:1441421-2351608	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv491607	chr6:1580681-1951526	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1020603	chr6:1697548-1921374	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv538093	chr6:1697548-1921374	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv869043	chr6:1744238-2006788	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv931941	chr6:1768439-2246781	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv531295	chr6:1773436-2724986	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
8	nsv883383	chr6:1775436-1918572	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv883384	chr6:1787862-1942538	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1032149	chr6:1848148-2006021	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv883385	chr6:1869592-1915828	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1032727	chr6:1900622-2064690	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv538095	chr6:1900622-2064690	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv883386	chr6:1910108-2122454	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:1877600-1915200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:1890600-1911400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:1891800-1914800	Weak transcription	Colonic Mucosa	Colon
4	chr6:1896000-1916400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:1897200-1916200	Weak transcription	Thymus	Thymus
6	chr6:1897400-1915000	Weak transcription	Esophagus	oesophagus
7	chr6:1897400-1915000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:1898600-1914800	Weak transcription	Gastric	stomach
9	chr6:1901600-1923400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:1904000-1913000	Weak transcription	Dnd41	blood
11	chr6:1904400-1912200	Weak transcription	Fetal Intestine Large	intestine
12	chr6:1905000-1970600	Weak transcription	Spleen	Spleen
13	chr6:1905200-1915000	Weak transcription	Left Ventricle	heart
14	chr6:1905200-1917400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:1905200-1926000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:1905200-1926000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:1905400-1962000	Weak transcription	Pancreas	Pancrea
18	chr6:1905600-1914200	Weak transcription	Ovary	ovary
19	chr6:1906200-1914800	Weak transcription	Fetal Intestine Small	intestine
20	chr6:1907400-1914800	Weak transcription	Fetal Stomach	stomach
21	chr6:1908000-1915000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:1908000-1919800	Weak transcription	GM12878-XiMat	blood
23	chr6:1908400-1933600	Weak transcription	Liver	Liver
24	chr6:1908800-1911400	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr6:1908800-1911600	Enhancers	NH-A	brain
26	chr6:1909800-1926000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr6:1910000-1918000	Weak transcription	Lung	lung
28	chr6:1910200-1914800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr6:1910200-1914800	Weak transcription	HepG2	liver
30	chr6:1910200-1915000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr6:1910200-1965800	Weak transcription	Small Intestine	intestine
32	chr6:1910600-1911400	Flanking Active TSS	HUVEC	blood vessel
33	chr6:1910800-1911400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:1910800-1911400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:1910800-1911400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:1910800-1911600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:1910800-1911600	Enhancers	NHEK	skin
38	chr6:1910800-1911800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:1910800-1911800	Enhancers	Fetal Kidney	kidney
40	chr6:1910800-1911800	Enhancers	NHDF-Ad	bronchial
41	chr6:1910800-1912000	Enhancers	HSMM	muscle
42	chr6:1910800-1912200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:1910800-1912400	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr6:1910800-1914800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:1911000-1915000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:1911000-1916200	Weak transcription	HMEC	breast
47	chr6:1911200-1911400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr6:1911200-1911400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:1911200-1911400	Enhancers	Adipose Nuclei	Adipose
50	chr6:1911200-1911600	Flanking Active TSS	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links