Variant report

Variant	rs548768
Chromosome Location	chr11:55269362-55269363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10501336	0.97[EUR][1000 genomes]
rs11823401	0.97[EUR][1000 genomes]
rs11827117	0.97[EUR][1000 genomes]
rs11828727	0.95[EUR][1000 genomes]
rs1364759	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1425195	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1459106	1.00[CEU][hapmap]
rs17494536	0.93[EUR][1000 genomes]
rs17494990	0.97[EUR][1000 genomes]
rs17496160	0.97[EUR][1000 genomes]
rs17579334	0.93[EUR][1000 genomes]
rs17579348	0.93[EUR][1000 genomes]
rs17579755	0.97[EUR][1000 genomes]
rs17579825	0.97[EUR][1000 genomes]
rs17580966	0.97[EUR][1000 genomes]
rs17580994	0.97[EUR][1000 genomes]
rs17581051	0.97[EUR][1000 genomes]
rs17581261	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17581303	1.00[CEU][hapmap]
rs17581532	1.00[CEU][hapmap]
rs17581700	1.00[CEU][hapmap]
rs17582140	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2169004	0.93[EUR][1000 genomes]
rs488213	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs492647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs505338	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs513939	0.98[AFR][1000 genomes]
rs530679	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55770365	0.97[EUR][1000 genomes]
rs55972122	0.97[EUR][1000 genomes]
rs56045005	0.93[EUR][1000 genomes]
rs56063922	0.97[EUR][1000 genomes]
rs56333107	0.97[EUR][1000 genomes]
rs61895192	0.97[EUR][1000 genomes]
rs61895193	0.97[EUR][1000 genomes]
rs61895194	0.95[EUR][1000 genomes]
rs61916282	0.97[EUR][1000 genomes]
rs61916283	0.97[EUR][1000 genomes]
rs61916284	0.97[EUR][1000 genomes]
rs61916285	0.95[EUR][1000 genomes]
rs61916286	0.97[EUR][1000 genomes]
rs61916289	0.97[EUR][1000 genomes]
rs61916290	0.97[EUR][1000 genomes]
rs61916319	0.97[EUR][1000 genomes]
rs61916320	0.97[EUR][1000 genomes]
rs61916321	0.97[EUR][1000 genomes]
rs61916328	0.97[EUR][1000 genomes]
rs61916455	0.93[EUR][1000 genomes]
rs61916565	0.97[EUR][1000 genomes]
rs61917939	0.97[EUR][1000 genomes]
rs61917940	0.97[EUR][1000 genomes]
rs61917941	0.97[EUR][1000 genomes]
rs61917942	0.97[EUR][1000 genomes]
rs61917986	0.93[EUR][1000 genomes]
rs61917987	0.93[EUR][1000 genomes]
rs61917988	0.93[EUR][1000 genomes]
rs61917989	0.93[EUR][1000 genomes]
rs61917998	0.93[EUR][1000 genomes]
rs61919565	0.97[EUR][1000 genomes]
rs7103342	0.93[EUR][1000 genomes]
rs7110861	0.97[EUR][1000 genomes]
rs7115527	0.97[EUR][1000 genomes]
rs7119347	0.97[EUR][1000 genomes]
rs7121555	0.97[EUR][1000 genomes]
rs7121804	1.00[CEU][hapmap]
rs7127405	1.00[CEU][hapmap]
rs7929606	0.97[EUR][1000 genomes]
rs7930341	0.97[EUR][1000 genomes]
rs7940290	0.97[EUR][1000 genomes]
rs7940305	0.97[EUR][1000 genomes]
rs7940435	0.97[EUR][1000 genomes]
rs7941275	0.97[EUR][1000 genomes]
rs7941839	0.97[EUR][1000 genomes]
rs7941860	0.97[EUR][1000 genomes]
rs7943092	0.93[EUR][1000 genomes]
rs7946976	1.00[CEU][hapmap]
rs7950685	0.93[EUR][1000 genomes]
rs7950755	0.97[EUR][1000 genomes]
rs7950956	0.95[EUR][1000 genomes]
rs9666121	0.97[EUR][1000 genomes]
rs9666260	0.97[EUR][1000 genomes]
rs9666744	0.97[EUR][1000 genomes]
rs9667732	0.97[EUR][1000 genomes]
rs979111	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs982276	1.00[CEU][hapmap];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830215	chr11:54711990-55340379	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1052144	chr11:54720811-55438474	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1053949	chr11:54773881-55363328	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1051643	chr11:54826801-55363328	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv524091	chr11:54875038-55522549	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
7	nsv975110	chr11:55076487-55318108	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
8	nsv467886	chr11:55083434-55408700	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
9	nsv554799	chr11:55083434-55408700	Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
10	nsv554800	chr11:55083434-55695985	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
11	nsv916012	chr11:55084067-55622531	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
12	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
13	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
14	nsv1036325	chr11:55119267-55442306	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island	19 gene(s)	inside rSNPs	diseases
15	esv2751031	chr11:55121706-55340753	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription	TF binding region CpG island	14 gene(s)	inside rSNPs	diseases
16	nsv821668	chr11:55153930-55816828	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
17	nsv518225	chr11:55171677-55408700	ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Enhancers	TF binding region CpG island	14 gene(s)	inside rSNPs	diseases
18	esv2758271	chr11:55222420-55621884	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
19	esv2759828	chr11:55222420-55638112	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
20	nsv832154	chr11:55222427-55408933	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription	TF binding region CpG island	10 gene(s)	inside rSNPs	diseases
21	nsv1042532	chr11:55233539-55279921	ZNF genes & repeats Weak transcription	TF binding region	5 gene(s)	inside rSNPs	diseases
22	nsv1046475	chr11:55241003-55381810	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Enhancers	TF binding region CpG island	8 gene(s)	inside rSNPs	diseases
23	nsv1047882	chr11:55241003-55386385	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island	8 gene(s)	inside rSNPs	diseases
24	esv3355751	chr11:55265576-55269974	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:55268600-55270400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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