Variant report

Variant	rs551501799
Chromosome Location	chr6:76321543-76321544
allele	-/CTGA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr6:76321109-76322064	U2OS	brain:	n/a	chr6:76321934-76321943

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FILIP1-2	chr6:76320906-76321661	NONHSAT113623

Variant related genes	Relation type
ENSG00000217488	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027915	chr6:75893542-76510113	Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv538311	chr6:75893542-76510113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv1022428	chr6:76023118-76575620	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
4	nsv538312	chr6:76023118-76575620	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
5	nsv1032245	chr6:76045537-76545703	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
6	nsv538313	chr6:76045537-76545703	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
7	nsv1019328	chr6:76154751-76604197	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
8	nsv538314	chr6:76154751-76604197	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv1023331	chr6:76238459-76482117	Strong transcription ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
10	nsv538315	chr6:76238459-76482117	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
11	nsv1017542	chr6:76238459-76537447	Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
12	nsv1031745	chr6:76257913-76493355	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
13	nsv538316	chr6:76257913-76493355	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
14	nsv533100	chr6:76257914-76493354	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
15	nsv1023749	chr6:76287578-76482117	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
16	nsv538317	chr6:76287578-76482117	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
17	nsv1021090	chr6:76306100-76759397	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
18	nsv538318	chr6:76306100-76759397	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
19	nsv886183	chr6:76320846-76399539	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
20	nsv886184	chr6:76320846-76462711	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
21	nsv886185	chr6:76320846-76498109	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76313800-76322200	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr6:76313800-76322200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr6:76313800-76325400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:76313800-76331600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:76314000-76321800	Weak transcription	Fetal Intestine Large	intestine
6	chr6:76314000-76323400	Enhancers	Primary T cells from cord blood	blood
7	chr6:76314000-76324600	Weak transcription	Fetal Stomach	stomach
8	chr6:76314000-76325600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:76314000-76325800	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr6:76314000-76326000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:76314000-76343200	Weak transcription	Fetal Kidney	kidney
12	chr6:76314200-76321800	Weak transcription	Fetal Thymus	thymus
13	chr6:76314200-76322000	Weak transcription	Placenta	Placenta
14	chr6:76314200-76322200	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:76314200-76324800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:76314200-76325200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr6:76314200-76325200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:76314200-76329000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:76314400-76321800	Weak transcription	Left Ventricle	heart
20	chr6:76314400-76323600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:76314400-76324600	Weak transcription	Esophagus	oesophagus
22	chr6:76314400-76327600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:76314400-76334800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:76314400-76336800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:76314800-76321800	Weak transcription	Lung	lung
26	chr6:76314800-76321800	Weak transcription	Spleen	Spleen
27	chr6:76315000-76321600	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr6:76315400-76322200	Weak transcription	Right Ventricle	heart
29	chr6:76316000-76323600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr6:76316400-76322800	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr6:76316400-76326000	Enhancers	Colon Smooth Muscle	Colon
32	chr6:76316600-76321800	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr6:76316600-76324800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr6:76316800-76322600	Weak transcription	Fetal Intestine Small	intestine
35	chr6:76316800-76323400	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr6:76317000-76321800	Weak transcription	Pancreas	Pancrea
37	chr6:76317000-76323400	Enhancers	Adipose Nuclei	Adipose
38	chr6:76317200-76324000	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr6:76317400-76322600	Enhancers	Brain Substantia Nigra	brain
40	chr6:76317600-76321600	Enhancers	Brain Hippocampus Middle	brain
41	chr6:76317600-76321800	Enhancers	Rectal Smooth Muscle	rectum
42	chr6:76317600-76323200	Enhancers	Primary B cells from peripheral blood	blood
43	chr6:76317600-76327400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:76317800-76322400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:76318000-76324000	Enhancers	NHDF-Ad	bronchial
46	chr6:76318200-76321600	Enhancers	Brain Cingulate Gyrus	brain
47	chr6:76318200-76321800	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr6:76318200-76321800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr6:76318200-76321800	Weak transcription	Psoas Muscle	Psoas
50	chr6:76318200-76324600	Weak transcription	Gastric	stomach

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