Variant report

Variant	rs55634095
Chromosome Location	chr6:113878713-113878714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56235437	1.00[AMR][1000 genomes]
rs59948514	1.00[AMR][1000 genomes]
rs73765220	1.00[AMR][1000 genomes]
rs73765246	1.00[AMR][1000 genomes]
rs73765248	1.00[AMR][1000 genomes]
rs73765255	1.00[AMR][1000 genomes]
rs73765270	1.00[AMR][1000 genomes]
rs73765276	1.00[AMR][1000 genomes]
rs73765277	1.00[AMR][1000 genomes]
rs73765279	1.00[AMR][1000 genomes]
rs73765281	1.00[AMR][1000 genomes]
rs73765282	1.00[AMR][1000 genomes]
rs73765284	1.00[AMR][1000 genomes]
rs73765285	1.00[AMR][1000 genomes]
rs73768446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113867400-113880600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:113874200-113879200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:113876600-113885600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:113877600-113885600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:113878200-113879000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:113878400-113879000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links