Variant report

Variant	rs73765282
Chromosome Location	chr6:113895846-113895847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55634095	1.00[AMR][1000 genomes]
rs56235437	1.00[AMR][1000 genomes]
rs59948514	1.00[AMR][1000 genomes]
rs73765220	1.00[AMR][1000 genomes]
rs73765246	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765248	1.00[AMR][1000 genomes]
rs73765255	1.00[AMR][1000 genomes]
rs73765270	1.00[AMR][1000 genomes]
rs73765276	1.00[AMR][1000 genomes]
rs73765277	1.00[AMR][1000 genomes]
rs73765279	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765281	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765284	1.00[AMR][1000 genomes]
rs73765285	1.00[AMR][1000 genomes]
rs73768446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113894600-113896000	Enhancers	HepG2	liver
2	chr6:113895400-113896000	Enhancers	Colon Smooth Muscle	Colon
3	chr6:113895400-113896800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:113895600-113896000	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr6:113895800-113900400	Weak transcription	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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