Variant report

Variant	rs73765270
Chromosome Location	chr6:113873100-113873101
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55634095	1.00[AMR][1000 genomes]
rs56235437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59948514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60821033	1.00[AFR][1000 genomes]
rs73765220	1.00[AMR][1000 genomes]
rs73765246	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765248	1.00[AMR][1000 genomes]
rs73765255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765276	1.00[AMR][1000 genomes]
rs73765277	1.00[AMR][1000 genomes]
rs73765279	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765281	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765282	1.00[AMR][1000 genomes]
rs73765284	1.00[AMR][1000 genomes]
rs73765285	1.00[AMR][1000 genomes]
rs73768446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv981078	chr6:113851437-113874497	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113867400-113880600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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