Variant report
| Variant | rs55638315 |
|---|---|
| Chromosome Location | chr19:38336654-38336655 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr19:38209488..38211320-chr19:38336530..38338721,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000198182 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs56019862 | 1.00[AFR][1000 genomes] |
| rs56030148 | 1.00[AFR][1000 genomes] |
| rs56265217 | 1.00[AFR][1000 genomes] |
| rs56266666 | 1.00[AFR][1000 genomes] |
| rs57542337 | 1.00[AFR][1000 genomes] |
| rs59096662 | 1.00[AFR][1000 genomes] |
| rs59474620 | 1.00[AFR][1000 genomes] |
| rs60588112 | 1.00[AFR][1000 genomes] |
| rs60756457 | 1.00[AFR][1000 genomes] |
| rs73930304 | 1.00[AFR][1000 genomes] |
| rs73930312 | 1.00[AFR][1000 genomes] |
| rs73930318 | 1.00[AFR][1000 genomes] |
| rs73932941 | 1.00[AFR][1000 genomes] |
| rs73932942 | 1.00[AFR][1000 genomes] |
| rs73932945 | 1.00[AFR][1000 genomes] |
| rs73932952 | 1.00[AFR][1000 genomes] |
| rs73932953 | 1.00[AFR][1000 genomes] |
| rs73932962 | 1.00[AFR][1000 genomes] |
| rs73932971 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949296 | chr19:38034722-38763140 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
| 2 | nsv833820 | chr19:38190721-38414049 | Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| 3 | nsv1062040 | chr19:38294465-38370456 | Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv3434717 | chr19:38326161-38347208 | ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:38336400-38337000 | Enhancers | Osteobl | bone |
