Variant report

Variant	rs73932942
Chromosome Location	chr19:38192122-38192123
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55638315	1.00[AFR][1000 genomes]
rs56019862	1.00[AFR][1000 genomes]
rs56030148	1.00[AFR][1000 genomes]
rs56265217	1.00[AFR][1000 genomes]
rs56266666	1.00[AFR][1000 genomes]
rs57542337	1.00[AFR][1000 genomes]
rs59096662	1.00[AFR][1000 genomes]
rs59474620	1.00[AFR][1000 genomes]
rs60588112	1.00[AFR][1000 genomes]
rs60756457	1.00[AFR][1000 genomes]
rs73930304	1.00[AFR][1000 genomes]
rs73930312	1.00[AFR][1000 genomes]
rs73930318	1.00[AFR][1000 genomes]
rs73932941	1.00[AFR][1000 genomes]
rs73932945	1.00[AFR][1000 genomes]
rs73932952	1.00[AFR][1000 genomes]
rs73932953	1.00[AFR][1000 genomes]
rs73932962	1.00[AFR][1000 genomes]
rs73932971	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv833820	chr19:38190721-38414049	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38183200-38208800	Weak transcription	Fetal Heart	heart
2	chr19:38184200-38201200	Weak transcription	Colonic Mucosa	Colon
3	chr19:38184400-38208800	Weak transcription	HepG2	liver
4	chr19:38187000-38207800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr19:38187000-38208000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:38187400-38192600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr19:38187400-38192600	Strong transcription	Left Ventricle	heart
8	chr19:38187400-38192800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr19:38187400-38192800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr19:38187400-38199000	ZNF genes & repeats	A549	lung
11	chr19:38187400-38205800	Strong transcription	Dnd41	blood
12	chr19:38187400-38208000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr19:38187600-38192800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr19:38187800-38192400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr19:38188000-38198200	Weak transcription	Pancreas	Pancrea
16	chr19:38188200-38197800	Weak transcription	Right Ventricle	heart
17	chr19:38188200-38209200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr19:38188400-38192200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr19:38188400-38192800	Strong transcription	Ovary	ovary
20	chr19:38188400-38195600	Weak transcription	Fetal Intestine Small	intestine
21	chr19:38188400-38202000	Weak transcription	Placenta	Placenta
22	chr19:38189400-38209200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr19:38189800-38195600	Weak transcription	Fetal Stomach	stomach
24	chr19:38190000-38193600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr19:38190000-38206600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr19:38190400-38196200	Weak transcription	Spleen	Spleen
27	chr19:38190400-38196800	Weak transcription	Gastric	stomach
28	chr19:38190400-38197200	Weak transcription	Small Intestine	intestine
29	chr19:38190600-38192200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr19:38190600-38192200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr19:38190600-38192400	Weak transcription	Aorta	Aorta
32	chr19:38190600-38194200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr19:38190600-38194400	Weak transcription	NHDF-Ad	bronchial
34	chr19:38190600-38194600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr19:38190600-38196200	Weak transcription	Fetal Brain Female	brain
36	chr19:38190600-38196800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr19:38190600-38197000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr19:38190600-38197200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr19:38190600-38197200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr19:38190600-38197200	Weak transcription	Brain Hippocampus Middle	brain
41	chr19:38190600-38197200	Weak transcription	Fetal Muscle Leg	muscle
42	chr19:38190600-38197400	Weak transcription	Thymus	Thymus
43	chr19:38190600-38198000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr19:38190600-38198400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr19:38190600-38198400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr19:38190600-38209000	Weak transcription	Brain Substantia Nigra	brain
47	chr19:38190600-38209200	Weak transcription	HSMMtube	muscle
48	chr19:38190800-38193400	Weak transcription	Hela-S3	cervix
49	chr19:38190800-38195800	Weak transcription	Brain Germinal Matrix	brain
50	chr19:38190800-38196000	Weak transcription	Placenta Amnion	Placenta Amnion

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