Variant report

Variant	rs73932952
Chromosome Location	chr19:38224096-38224097
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55638315	1.00[AFR][1000 genomes]
rs56019862	1.00[AFR][1000 genomes]
rs56030148	1.00[AFR][1000 genomes]
rs56265217	1.00[AFR][1000 genomes]
rs56266666	1.00[AFR][1000 genomes]
rs57542337	1.00[AFR][1000 genomes]
rs59096662	1.00[AFR][1000 genomes]
rs59474620	1.00[AFR][1000 genomes]
rs60588112	1.00[AFR][1000 genomes]
rs60756457	1.00[AFR][1000 genomes]
rs73930304	1.00[AFR][1000 genomes]
rs73930312	1.00[AFR][1000 genomes]
rs73930318	1.00[AFR][1000 genomes]
rs73932941	1.00[AFR][1000 genomes]
rs73932942	1.00[AFR][1000 genomes]
rs73932945	1.00[AFR][1000 genomes]
rs73932953	1.00[AFR][1000 genomes]
rs73932962	1.00[AFR][1000 genomes]
rs73932971	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv833820	chr19:38190721-38414049	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38210800-38229400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr19:38211000-38224600	Weak transcription	Fetal Stomach	stomach
3	chr19:38211000-38225200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr19:38211000-38225200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr19:38211000-38226400	Weak transcription	Psoas Muscle	Psoas
6	chr19:38211000-38227600	Weak transcription	Brain Hippocampus Middle	brain
7	chr19:38211000-38228400	Weak transcription	Fetal Muscle Leg	muscle
8	chr19:38211000-38228600	Weak transcription	Brain Substantia Nigra	brain
9	chr19:38211000-38229200	Weak transcription	Fetal Kidney	kidney
10	chr19:38211000-38229200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr19:38211000-38229200	Weak transcription	Left Ventricle	heart
12	chr19:38211000-38229400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr19:38211000-38229400	Weak transcription	Brain Germinal Matrix	brain
14	chr19:38211000-38229400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr19:38211000-38230200	Weak transcription	Hela-S3	cervix
16	chr19:38211200-38225600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr19:38211200-38229200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr19:38211200-38229200	Weak transcription	Fetal Brain Female	brain
19	chr19:38211200-38229200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr19:38218400-38229200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr19:38219400-38224600	Weak transcription	Ovary	ovary
22	chr19:38221200-38241800	ZNF genes & repeats	Liver	Liver
23	chr19:38221800-38225200	Weak transcription	Right Ventricle	heart
24	chr19:38221800-38225800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr19:38222200-38225400	Weak transcription	Pancreas	Pancrea
26	chr19:38222800-38225200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr19:38223600-38225400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr19:38223800-38227000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr19:38224000-38224200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
30	chr19:38224000-38229400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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