Variant report

Variant	rs56265217
Chromosome Location	chr19:38392770-38392771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55638315	1.00[AFR][1000 genomes]
rs56019862	1.00[AFR][1000 genomes]
rs56030148	1.00[AFR][1000 genomes]
rs56266666	1.00[AFR][1000 genomes]
rs57542337	1.00[AFR][1000 genomes]
rs59096662	1.00[AFR][1000 genomes]
rs59474620	1.00[AFR][1000 genomes]
rs60588112	1.00[AFR][1000 genomes]
rs60756457	1.00[AFR][1000 genomes]
rs73930304	1.00[AFR][1000 genomes]
rs73930312	1.00[AFR][1000 genomes]
rs73930318	1.00[AFR][1000 genomes]
rs73932941	1.00[AFR][1000 genomes]
rs73932942	1.00[AFR][1000 genomes]
rs73932945	1.00[AFR][1000 genomes]
rs73932952	1.00[AFR][1000 genomes]
rs73932953	1.00[AFR][1000 genomes]
rs73932962	1.00[AFR][1000 genomes]
rs73932971	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv833820	chr19:38190721-38414049	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1064401	chr19:38387797-38427984	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38389600-38396600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr19:38390800-38393200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr19:38391400-38393200	Weak transcription	A549	lung
4	chr19:38392400-38396600	Weak transcription	Placenta	Placenta
5	chr19:38392600-38396600	Weak transcription	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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