Variant report

Variant	rs73930312
Chromosome Location	chr19:38386664-38386665
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55638315	1.00[AFR][1000 genomes]
rs56019862	1.00[AFR][1000 genomes]
rs56030148	1.00[AFR][1000 genomes]
rs56265217	1.00[AFR][1000 genomes]
rs56266666	1.00[AFR][1000 genomes]
rs57542337	1.00[AFR][1000 genomes]
rs59096662	1.00[AFR][1000 genomes]
rs59474620	1.00[AFR][1000 genomes]
rs60588112	1.00[AFR][1000 genomes]
rs60756457	1.00[AFR][1000 genomes]
rs73930304	1.00[AFR][1000 genomes]
rs73930318	1.00[AFR][1000 genomes]
rs73932941	1.00[AFR][1000 genomes]
rs73932942	1.00[AFR][1000 genomes]
rs73932945	1.00[AFR][1000 genomes]
rs73932952	1.00[AFR][1000 genomes]
rs73932953	1.00[AFR][1000 genomes]
rs73932962	1.00[AFR][1000 genomes]
rs73932971	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv833820	chr19:38190721-38414049	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38383800-38387000	Weak transcription	Right Atrium	heart
2	chr19:38384000-38387600	Enhancers	Fetal Muscle Leg	muscle
3	chr19:38386000-38389400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr19:38386600-38387000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr19:38386600-38387200	Bivalent Enhancer	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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