Variant report
| Variant | rs55641669 |
|---|---|
| Chromosome Location | chr8:91207635-91207636 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:91195100..91196918-chr8:91207528..91209221,2 | K562 | blood: | |
| 2 | chr8:91204870..91208091-chr8:91210126..91212391,3 | K562 | blood: | |
| 3 | chr8:90991149..90993502-chr8:91207366..91210281,2 | K562 | blood: | |
| 4 | chr8:91207044..91210489-chr8:91227882..91229931,3 | K562 | blood: | |
| 5 | chr8:91207463..91209619-chr8:91232587..91235024,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000253394 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11776578 | 1.00[ASN][1000 genomes] |
| rs11777851 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11779938 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11989856 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12114040 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12115012 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16904078 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16904104 | 1.00[EUR][1000 genomes] |
| rs55642901 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55899852 | 1.00[ASN][1000 genomes] |
| rs56044560 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56400806 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58912966 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60226967 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73695307 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73695315 | 1.00[ASN][1000 genomes] |
| rs73695320 | 1.00[ASN][1000 genomes] |
| rs73698034 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9969448 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758164 | chr8:91000786-91329669 | Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | esv2759628 | chr8:91000786-91329669 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | esv2757281 | chr8:91090821-91235335 | Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 4 | nsv470225 | chr8:91113616-91229254 | Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 10 gene(s) | inside rSNPs | diseases |
| 5 | nsv891184 | chr8:91114698-91222654 | Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | 10 gene(s) | inside rSNPs | diseases |
| 6 | esv35109 | chr8:91150726-91226940 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | Chromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
| 7 | nsv818643 | chr8:91153308-91212148 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers | Chromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:91207400-91208200 | Flanking Active TSS | K562 | blood |
