Variant report

Variant	rs58912966
Chromosome Location	chr8:91243440-91243441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11776578	1.00[ASN][1000 genomes]
rs11777851	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779938	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989856	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114040	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12115012	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16904078	1.00[ASN][1000 genomes]
rs16904104	0.93[EUR][1000 genomes]
rs55641669	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55642901	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55899852	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56044560	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56400806	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60226967	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73695307	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73695315	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73695320	1.00[ASN][1000 genomes]
rs73698034	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9969448	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91240200-91244200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:91240600-91244800	Enhancers	Hela-S3	cervix
3	chr8:91242400-91244000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:91242600-91244200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr8:91242800-91244000	Flanking Active TSS	K562	blood
6	chr8:91243400-91243600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:91243400-91243600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:91243400-91243800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:91243400-91243800	Enhancers	NHEK	skin
10	chr8:91243400-91244000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:91243400-91244200	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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