Variant report

Variant	rs55649379
Chromosome Location	chr5:107257789-107257790
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11958297	1.00[AMR][1000 genomes]
rs55841780	1.00[AMR][1000 genomes]
rs55848166	1.00[AMR][1000 genomes]
rs56240055	1.00[AMR][1000 genomes]
rs58166373	1.00[AMR][1000 genomes]
rs60760521	1.00[AMR][1000 genomes]
rs60936813	1.00[AMR][1000 genomes]
rs6596753	1.00[AMR][1000 genomes]
rs73204337	1.00[AMR][1000 genomes]
rs73204341	1.00[AMR][1000 genomes]
rs73780423	1.00[AMR][1000 genomes]
rs73780434	1.00[AMR][1000 genomes]
rs73780437	1.00[AMR][1000 genomes]
rs73780438	1.00[AMR][1000 genomes]
rs73780446	1.00[AMR][1000 genomes]
rs73780447	1.00[AMR][1000 genomes]
rs73780455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73780458	1.00[AMR][1000 genomes]
rs73780462	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107248600-107258600	Weak transcription	Left Ventricle	heart
2	chr5:107251600-107261000	Weak transcription	Aorta	Aorta
3	chr5:107254000-107258000	Weak transcription	Thymus	Thymus
4	chr5:107254000-107259000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:107254000-107262600	Weak transcription	Pancreas	Pancrea
6	chr5:107254200-107258200	Weak transcription	Primary T cells from cord blood	blood
7	chr5:107254600-107258400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:107255200-107259600	Weak transcription	Dnd41	blood
9	chr5:107257000-107258600	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr5:107257200-107257800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:107257400-107262000	Enhancers	Fetal Thymus	thymus
12	chr5:107257600-107258400	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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