Variant report

Variant	rs73780462
Chromosome Location	chr5:107272556-107272557
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11958297	1.00[AMR][1000 genomes]
rs55649379	1.00[AMR][1000 genomes]
rs55841780	1.00[AMR][1000 genomes]
rs55848166	1.00[AMR][1000 genomes]
rs56240055	1.00[AMR][1000 genomes]
rs58166373	1.00[AMR][1000 genomes]
rs60760521	1.00[AMR][1000 genomes]
rs60936813	1.00[AMR][1000 genomes]
rs6596753	1.00[AMR][1000 genomes]
rs73204337	1.00[AMR][1000 genomes]
rs73204341	1.00[AMR][1000 genomes]
rs73780423	1.00[AMR][1000 genomes]
rs73780434	1.00[AMR][1000 genomes]
rs73780437	1.00[AMR][1000 genomes]
rs73780438	1.00[AMR][1000 genomes]
rs73780446	1.00[AMR][1000 genomes]
rs73780447	1.00[AMR][1000 genomes]
rs73780455	1.00[AMR][1000 genomes]
rs73780458	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv969971	chr5:107271363-107275367	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3471322	chr5:107272245-107273073	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3471323	chr5:107272245-107273073	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107261800-107273400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:107265800-107284200	Weak transcription	Primary T cells from cord blood	blood
4	chr5:107267400-107273800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:107267800-107273400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:107268600-107273800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:107268800-107273200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:107268800-107273200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:107269800-107273200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:107269800-107275200	Weak transcription	Primary B cells from cord blood	blood
11	chr5:107270800-107272800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:107271000-107273600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr5:107271000-107273800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:107271000-107274400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:107271200-107273400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr5:107271200-107274600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:107271400-107273600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:107271400-107274200	Enhancers	HepG2	liver
19	chr5:107271600-107272800	Weak transcription	Fetal Brain Female	brain
20	chr5:107271800-107272800	Weak transcription	Fetal Brain Male	brain
21	chr5:107272000-107273000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr5:107272000-107274000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:107272200-107273400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr5:107272200-107273800	Enhancers	Brain Anterior Caudate	brain
25	chr5:107272200-107274200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr5:107272400-107272600	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr5:107272400-107273800	Enhancers	Fetal Kidney	kidney

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