Variant report

Variant	rs73780447
Chromosome Location	chr5:107222708-107222709
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11958297	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55649379	1.00[AMR][1000 genomes]
rs55841780	1.00[AMR][1000 genomes]
rs55848166	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56240055	1.00[AMR][1000 genomes]
rs57362422	1.00[ASN][1000 genomes]
rs57444549	1.00[ASN][1000 genomes]
rs57966309	1.00[ASN][1000 genomes]
rs58166373	1.00[AMR][1000 genomes]
rs59415577	1.00[ASN][1000 genomes]
rs60760521	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60771809	1.00[ASN][1000 genomes]
rs60936813	1.00[AMR][1000 genomes]
rs6596753	1.00[AMR][1000 genomes]
rs73204337	1.00[AMR][1000 genomes]
rs73204341	1.00[AMR][1000 genomes]
rs73216658	1.00[ASN][1000 genomes]
rs73780423	1.00[AMR][1000 genomes]
rs73780434	1.00[AMR][1000 genomes]
rs73780437	1.00[AMR][1000 genomes]
rs73780438	1.00[AMR][1000 genomes]
rs73780445	1.00[ASN][1000 genomes]
rs73780446	1.00[AMR][1000 genomes]
rs73780455	1.00[AMR][1000 genomes]
rs73780458	1.00[AMR][1000 genomes]
rs73780462	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107195400-107223200	Weak transcription	Left Ventricle	heart
2	chr5:107196800-107223200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr5:107197800-107228800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:107198000-107223000	Weak transcription	Adipose Nuclei	Adipose
5	chr5:107205800-107230000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:107209400-107226000	Weak transcription	Psoas Muscle	Psoas
7	chr5:107212000-107228800	Weak transcription	Aorta	Aorta
8	chr5:107212400-107223200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:107213000-107223200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:107213200-107225000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:107213600-107223400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:107216000-107223000	Weak transcription	Ovary	ovary
13	chr5:107216200-107223000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr5:107216400-107240600	Weak transcription	Primary B cells from cord blood	blood
15	chr5:107216600-107226200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr5:107220000-107223000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:107220400-107223000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:107220600-107223200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr5:107221000-107222800	Enhancers	Primary T cells from cord blood	blood
20	chr5:107221400-107223600	Enhancers	Thymus	Thymus
21	chr5:107221800-107223600	Enhancers	HUVEC	blood vessel
22	chr5:107221800-107229000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr5:107222000-107223000	Enhancers	GM12878-XiMat	blood
24	chr5:107222000-107223200	Enhancers	Fetal Intestine Small	intestine
25	chr5:107222200-107223200	Enhancers	Fetal Intestine Large	intestine
26	chr5:107222200-107223800	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr5:107222600-107222800	Enhancers	Duodenum Mucosa	Duodenum
28	chr5:107222600-107223000	Weak transcription	Fetal Thymus	thymus
29	chr5:107222600-107223200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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