Variant report

Variant	rs55841780
Chromosome Location	chr5:107225288-107225289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11958297	1.00[AMR][1000 genomes]
rs55649379	1.00[AMR][1000 genomes]
rs55848166	1.00[AMR][1000 genomes]
rs56240055	1.00[AMR][1000 genomes]
rs58166373	1.00[AMR][1000 genomes]
rs60760521	1.00[AMR][1000 genomes]
rs60936813	1.00[AMR][1000 genomes]
rs6596753	1.00[AMR][1000 genomes]
rs73204337	1.00[AMR][1000 genomes]
rs73204341	1.00[AMR][1000 genomes]
rs73780423	1.00[AMR][1000 genomes]
rs73780434	1.00[AMR][1000 genomes]
rs73780437	1.00[AMR][1000 genomes]
rs73780438	1.00[AMR][1000 genomes]
rs73780446	1.00[AMR][1000 genomes]
rs73780447	1.00[AMR][1000 genomes]
rs73780455	1.00[AMR][1000 genomes]
rs73780458	1.00[AMR][1000 genomes]
rs73780462	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107197800-107228800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:107205800-107230000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:107209400-107226000	Weak transcription	Psoas Muscle	Psoas
4	chr5:107212000-107228800	Weak transcription	Aorta	Aorta
5	chr5:107216400-107240600	Weak transcription	Primary B cells from cord blood	blood
6	chr5:107216600-107226200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr5:107221800-107229000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:107222800-107226000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:107223600-107225600	Weak transcription	Left Ventricle	heart
10	chr5:107223600-107229000	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:107223600-107229400	Weak transcription	HUVEC	blood vessel
12	chr5:107223600-107229800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:107224400-107229400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:107225000-107225400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:107225000-107225400	Enhancers	Rectal Smooth Muscle	rectum
16	chr5:107225000-107226000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:107225200-107225400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:107225200-107225400	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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