Variant report

Variant	rs6596753
Chromosome Location	chr5:107161355-107161356
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11958297	1.00[AMR][1000 genomes]
rs55649379	1.00[AMR][1000 genomes]
rs55841780	1.00[AMR][1000 genomes]
rs55848166	1.00[AMR][1000 genomes]
rs56240055	1.00[AMR][1000 genomes]
rs58166373	1.00[AMR][1000 genomes]
rs60760521	1.00[AMR][1000 genomes]
rs60936813	1.00[AMR][1000 genomes]
rs73204337	1.00[AMR][1000 genomes]
rs73204341	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73780423	1.00[AMR][1000 genomes]
rs73780434	1.00[AMR][1000 genomes]
rs73780437	1.00[AMR][1000 genomes]
rs73780438	1.00[AMR][1000 genomes]
rs73780446	1.00[AMR][1000 genomes]
rs73780447	1.00[AMR][1000 genomes]
rs73780455	1.00[AMR][1000 genomes]
rs73780458	1.00[AMR][1000 genomes]
rs73780462	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107144400-107167600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:107153600-107162000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:107156200-107161800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:107157200-107166600	Weak transcription	NHDF-Ad	bronchial
5	chr5:107159400-107161400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:107160600-107162400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:107160600-107162400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:107160600-107162600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:107160800-107162200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr5:107160800-107162400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:107160800-107162600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:107161000-107162200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:107161000-107162600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:107161000-107162600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr5:107161200-107162000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:107161200-107162000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:107161200-107162200	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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