Variant report

Variant	rs55685338
Chromosome Location	chr2:114618988-114618989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114616510..114619401-chr2:114621099..114622911,3	MCF-7	breast:
2	chr2:114615060..114620360-chr2:114646762..114649306,5	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC35F5-3	chr2:114618472-114619141	NONHSAT073841

Variant related genes	Relation type
ENSG00000270019	Chromatin interaction
ENSG00000115091	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1022412	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11896388	0.80[AMR][1000 genomes]
rs11898729	0.95[ASN][1000 genomes]
rs11899049	0.82[ASN][1000 genomes]
rs12465537	0.87[ASN][1000 genomes]
rs12466566	0.98[ASN][1000 genomes]
rs12711790	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13003655	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13388876	0.95[ASN][1000 genomes]
rs13401311	0.98[ASN][1000 genomes]
rs13405706	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1403402	0.82[AMR][1000 genomes]
rs1467291	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17045275	0.95[ASN][1000 genomes]
rs1916201	0.82[AMR][1000 genomes]
rs1984794	0.96[ASN][1000 genomes]
rs2140263	0.98[ASN][1000 genomes]
rs28423681	0.98[ASN][1000 genomes]
rs3791737	0.82[AMR][1000 genomes]
rs3791743	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4278937	0.83[ASN][1000 genomes]
rs4338971	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6542177	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6542178	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6542181	0.82[AMR][1000 genomes]
rs6542182	0.82[AMR][1000 genomes]
rs6720853	0.84[ASN][1000 genomes]
rs6723415	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6734839	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6740934	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6743651	0.91[ASN][1000 genomes]
rs6760347	0.96[ASN][1000 genomes]
rs7567097	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7582072	0.80[AMR][1000 genomes]
rs7585468	0.83[ASN][1000 genomes]
rs7595941	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7603764	0.82[AMR][1000 genomes]
rs9308686	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs996514	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs996515	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114596400-114621000	Weak transcription	Aorta	Aorta
2	chr2:114596800-114632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr2:114597600-114631400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr2:114602800-114626000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr2:114603800-114631200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr2:114606200-114621800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:114611600-114623400	Enhancers	Primary B cells from peripheral blood	blood
8	chr2:114612800-114626000	Weak transcription	Thymus	Thymus
9	chr2:114613200-114631400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr2:114614000-114621800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr2:114615000-114621200	Enhancers	GM12878-XiMat	blood
12	chr2:114615600-114619600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr2:114615600-114619800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr2:114616600-114619400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr2:114617000-114619400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr2:114617400-114619800	Enhancers	Primary B cells from cord blood	blood
17	chr2:114618200-114623200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:114618400-114619000	Strong transcription	Primary T cells from cord blood	blood
19	chr2:114618600-114619000	Weak transcription	K562	blood
20	chr2:114618600-114619000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr2:114618600-114619600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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