Variant report

Variant	rs1916201
Chromosome Location	chr2:114651752-114651753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr2:114651683-114652546	HepG2	liver:	n/a	n/a
2	MYC	chr2:114651444-114652338	K562	blood:	n/a	chr2:114652061-114652070 chr2:114652060-114652069
3	POLR2A	chr2:114651336-114652545	GM12878	blood:	n/a	n/a
4	POLR2A	chr2:114651680-114651758	HepG2	liver:	n/a	n/a
5	POLR2A	chr2:114651604-114652386	GM12892	blood:	n/a	n/a
6	POLR2A	chr2:114651038-114652623	GM12878	blood:	n/a	n/a
7	POLR2A	chr2:114651746-114652524	U87	brain:	n/a	n/a
8	TEAD4	chr2:114651715-114652608	HepG2	liver:	n/a	n/a
9	POLR2A	chr2:114651726-114652341	GM12892	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr2:114649589..114651914-chr2:114675375..114678075,2	MCF-7	breast:
2	chr2:114510034..114517579-chr2:114643441..114655407,23	MCF-7	breast:
3	chr2:114651373..114654113-chr2:114668115..114670436,3	K562	blood:
4	chr2:114650237..114652032-chr2:114672762..114674303,2	MCF-7	breast:
5	chr2:114512332..114515034-chr2:114651411..114654635,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270019	TF binding region
ENSG00000115084	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10165272	0.97[ASN][1000 genomes]
rs10167298	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10177263	0.97[ASN][1000 genomes]
rs10194568	0.95[ASN][1000 genomes]
rs10195630	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10201959	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10202134	0.97[ASN][1000 genomes]
rs10207551	0.97[ASN][1000 genomes]
rs10207785	0.97[ASN][1000 genomes]
rs10210324	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1022412	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11123218	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11887418	0.94[ASN][1000 genomes]
rs11887772	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11889821	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11890727	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11893418	0.97[ASN][1000 genomes]
rs11896388	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11898729	0.83[ASN][1000 genomes]
rs11899049	0.85[ASN][1000 genomes]
rs12464791	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12466566	0.80[ASN][1000 genomes]
rs12466572	0.96[ASN][1000 genomes]
rs12613877	0.96[ASN][1000 genomes]
rs12618683	0.96[ASN][1000 genomes]
rs12711790	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12711794	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13003655	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13387553	0.94[ASN][1000 genomes]
rs13388876	0.83[ASN][1000 genomes]
rs13396086	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13396561	0.93[ASN][1000 genomes]
rs13401311	0.80[ASN][1000 genomes]
rs13405344	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13405706	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13418557	0.93[ASN][1000 genomes]
rs13422248	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1403402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1467291	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1486800	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1504042	0.98[ASN][1000 genomes]
rs17045275	0.83[ASN][1000 genomes]
rs1984794	0.81[ASN][1000 genomes]
rs2140263	0.80[ASN][1000 genomes]
rs2419080	0.96[ASN][1000 genomes]
rs28423681	0.80[ASN][1000 genomes]
rs3791736	0.80[ASN][1000 genomes]
rs3791737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3791739	0.98[ASN][1000 genomes]
rs3791743	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4278937	0.95[ASN][1000 genomes]
rs4338971	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55685338	0.82[AMR][1000 genomes]
rs55810358	0.97[ASN][1000 genomes]
rs6542177	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6542178	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6542181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6542182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6542184	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6542186	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6711858	0.98[ASN][1000 genomes]
rs6720853	0.93[ASN][1000 genomes]
rs6723415	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6726327	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6729412	0.94[ASN][1000 genomes]
rs6734273	0.82[ASN][1000 genomes]
rs6734839	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6738134	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6740934	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6743651	0.86[ASN][1000 genomes]
rs6750503	0.93[ASN][1000 genomes]
rs6760347	0.81[ASN][1000 genomes]
rs6761646	0.89[ASN][1000 genomes]
rs7567097	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7582072	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7585468	0.95[ASN][1000 genomes]
rs7595941	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7603501	0.97[ASN][1000 genomes]
rs7603764	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9308686	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs996513	0.83[AMR][1000 genomes]
rs996514	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs996515	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114648600-114657800	Weak transcription	Gastric	stomach
2	chr2:114648600-114667600	Weak transcription	Lung	lung
3	chr2:114648800-114653400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:114649000-114651800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr2:114649000-114652000	Weak transcription	Ovary	ovary
6	chr2:114649200-114652000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr2:114649200-114652000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:114649200-114653200	Enhancers	Brain Anterior Caudate	brain
9	chr2:114649200-114653400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:114649200-114661200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr2:114649200-114673200	Weak transcription	Placenta	Placenta
12	chr2:114649400-114652200	Enhancers	Brain Angular Gyrus	brain
13	chr2:114649400-114654000	Genic enhancers	Primary B cells from peripheral blood	blood
14	chr2:114649400-114655200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr2:114649600-114652000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr2:114649600-114661000	Weak transcription	Fetal Muscle Leg	muscle
17	chr2:114649800-114652400	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
18	chr2:114649800-114653800	Weak transcription	Fetal Stomach	stomach
19	chr2:114649800-114655600	Enhancers	Small Intestine	intestine
20	chr2:114650000-114651800	Enhancers	Duodenum Mucosa	Duodenum
21	chr2:114650000-114652000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr2:114650000-114652400	Enhancers	Colon Smooth Muscle	Colon
23	chr2:114650000-114653000	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr2:114650000-114653000	Weak transcription	Right Atrium	heart
25	chr2:114650000-114654400	Weak transcription	Fetal Intestine Small	intestine
26	chr2:114650000-114655600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr2:114650200-114651800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr2:114650200-114651800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr2:114650200-114652000	Weak transcription	Thymus	Thymus
30	chr2:114650200-114652200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr2:114650200-114652200	Enhancers	Fetal Brain Male	brain
32	chr2:114650200-114652400	Enhancers	Brain Germinal Matrix	brain
33	chr2:114650200-114653400	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr2:114650200-114653400	Strong transcription	Fetal Thymus	thymus
35	chr2:114650200-114653800	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr2:114650200-114654200	Genic enhancers	HSMM	muscle
37	chr2:114650200-114654600	Genic enhancers	Dnd41	blood
38	chr2:114650200-114658400	Enhancers	Adipose Nuclei	Adipose
39	chr2:114650200-114658400	Enhancers	Stomach Mucosa	stomach
40	chr2:114650200-114661000	Weak transcription	Right Ventricle	heart
41	chr2:114650400-114654400	Weak transcription	Fetal Lung	lung
42	chr2:114650400-114655400	Weak transcription	Fetal Intestine Large	intestine
43	chr2:114650600-114651800	Weak transcription	Aorta	Aorta
44	chr2:114650600-114652000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr2:114650600-114652000	Weak transcription	Fetal Kidney	kidney
46	chr2:114650600-114652000	Enhancers	HUVEC	blood vessel
47	chr2:114650600-114652200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr2:114650600-114653000	Enhancers	Hela-S3	cervix
49	chr2:114650600-114654200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr2:114650800-114651800	Genic enhancers	Primary B cells from cord blood	blood

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