Variant report

Variant	rs13388876
Chromosome Location	chr2:114626009-114626010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114623730..114628416-chr2:114629384..114634223,5	K562	blood:
2	chr2:114624157..114627131-chr2:114645783..114647455,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270019	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10165272	0.80[ASN][1000 genomes]
rs10177263	0.80[ASN][1000 genomes]
rs10195630	0.80[ASN][1000 genomes]
rs10201959	0.80[ASN][1000 genomes]
rs10202134	0.80[ASN][1000 genomes]
rs10207551	0.80[ASN][1000 genomes]
rs10207785	0.80[ASN][1000 genomes]
rs10210324	0.80[ASN][1000 genomes]
rs1022412	0.88[ASN][1000 genomes]
rs10496455	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11123218	0.80[ASN][1000 genomes]
rs11889821	0.80[ASN][1000 genomes]
rs11890727	0.80[ASN][1000 genomes]
rs11893418	0.80[ASN][1000 genomes]
rs11896388	0.80[ASN][1000 genomes]
rs11898729	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11899049	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12464791	0.80[ASN][1000 genomes]
rs12465537	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12466566	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12613877	0.80[EUR][1000 genomes]
rs12618683	0.81[ASN][1000 genomes]
rs12711790	0.88[ASN][1000 genomes]
rs13003655	0.86[ASN][1000 genomes]
rs13401311	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13405344	0.80[ASN][1000 genomes]
rs13405706	0.88[ASN][1000 genomes]
rs13422248	0.80[ASN][1000 genomes]
rs1403402	0.81[ASN][1000 genomes]
rs1467291	0.86[ASN][1000 genomes]
rs1504042	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17045275	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1916201	0.83[ASN][1000 genomes]
rs1984794	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2140263	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28423681	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3791736	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3791737	0.80[ASN][1000 genomes]
rs3791739	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3791743	0.85[ASN][1000 genomes]
rs4278937	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4338971	0.88[ASN][1000 genomes]
rs55685338	0.95[ASN][1000 genomes]
rs55810358	0.80[ASN][1000 genomes]
rs59357342	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6542177	0.85[ASN][1000 genomes]
rs6542178	0.89[ASN][1000 genomes]
rs6542181	0.81[ASN][1000 genomes]
rs6711858	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6720853	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6723415	0.88[ASN][1000 genomes]
rs6734273	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6734839	0.89[ASN][1000 genomes]
rs6740934	0.88[ASN][1000 genomes]
rs6743651	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6760347	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7567097	0.89[ASN][1000 genomes]
rs7582072	0.80[ASN][1000 genomes]
rs7585468	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7595941	0.98[ASN][1000 genomes]
rs7603501	0.80[ASN][1000 genomes]
rs7603764	0.83[ASN][1000 genomes]
rs9308686	0.89[ASN][1000 genomes]
rs996514	0.85[ASN][1000 genomes]
rs996515	0.85[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114596800-114632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr2:114597600-114631400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr2:114603800-114631200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:114613200-114631400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:114619000-114631400	Weak transcription	Primary T cells from cord blood	blood
6	chr2:114621200-114639600	Weak transcription	GM12878-XiMat	blood
7	chr2:114621400-114638400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr2:114623600-114628800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:114625000-114626200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:114625000-114626200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr2:114625000-114626800	Enhancers	Primary B cells from peripheral blood	blood
12	chr2:114625200-114626200	Enhancers	Duodenum Mucosa	Duodenum
13	chr2:114625400-114626600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr2:114625400-114626800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr2:114625600-114626200	Flanking Active TSS	HepG2	liver
16	chr2:114625800-114626400	Enhancers	Primary B cells from cord blood	blood
17	chr2:114625800-114633800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr2:114626000-114626600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr2:114626000-114626600	Enhancers	Thymus	Thymus
20	chr2:114626000-114626600	Enhancers	K562	blood
21	chr2:114626000-114626800	Enhancers	Fetal Thymus	thymus

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