Variant report

Variant	rs6734839
Chromosome Location	chr2:114636645-114636646
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114634689..114637227-chr2:114637787..114640303,2	K562	blood:
2	chr2:114634584..114637421-chr2:118770170..118773042,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125633	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10165272	1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs10167298	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10177263	0.90[ASN][1000 genomes]
rs10194568	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs10195630	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10201959	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10202134	0.90[ASN][1000 genomes]
rs10207551	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs10207785	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs10210324	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1022412	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11123218	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11887418	0.88[ASN][1000 genomes]
rs11887772	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11889821	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11890727	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11893418	0.90[ASN][1000 genomes]
rs11896388	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11898729	0.89[ASN][1000 genomes]
rs11899049	0.90[CHB][hapmap]
rs12464791	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12466566	0.86[ASN][1000 genomes]
rs12466572	0.89[ASN][1000 genomes]
rs12613877	0.89[ASN][1000 genomes]
rs12618683	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs12711790	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12711794	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13003655	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13387553	0.88[ASN][1000 genomes]
rs13388876	0.89[ASN][1000 genomes]
rs13396086	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13396561	0.87[ASN][1000 genomes]
rs13401311	0.86[ASN][1000 genomes]
rs13405344	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13405706	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13418557	0.86[ASN][1000 genomes]
rs13422248	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1403402	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1467291	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1486800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1504042	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs17045275	0.89[ASN][1000 genomes]
rs1916201	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1984794	0.88[ASN][1000 genomes]
rs2140263	0.89[CHB][hapmap];0.86[ASN][1000 genomes]
rs2419080	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs28423681	0.86[ASN][1000 genomes]
rs3791737	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3791739	0.92[ASN][1000 genomes]
rs3791743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4278937	0.98[ASN][1000 genomes]
rs4338971	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55685338	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55810358	0.90[ASN][1000 genomes]
rs6542177	0.88[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6542178	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6542181	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6542182	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6542184	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6542186	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6711858	0.92[ASN][1000 genomes]
rs6720853	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6723415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6726327	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6729412	0.88[ASN][1000 genomes]
rs6738134	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6740934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6743651	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs6750503	0.86[ASN][1000 genomes]
rs6760347	0.88[ASN][1000 genomes]
rs6761646	1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs7567097	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7582072	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7585468	0.98[ASN][1000 genomes]
rs7595941	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7603501	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs7603764	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9308686	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs996513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs996514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs996515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114621200-114639600	Weak transcription	GM12878-XiMat	blood
2	chr2:114621400-114638400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:114631400-114644000	Weak transcription	Spleen	Spleen
4	chr2:114631800-114639000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:114633800-114636800	Enhancers	Fetal Intestine Large	intestine
6	chr2:114633800-114636800	Enhancers	HMEC	breast
7	chr2:114633800-114637200	Enhancers	Stomach Mucosa	stomach
8	chr2:114633800-114646800	Weak transcription	Aorta	Aorta
9	chr2:114634200-114636800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:114634200-114636800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:114634200-114636800	Enhancers	Fetal Intestine Small	intestine
12	chr2:114634200-114636800	Enhancers	A549	lung
13	chr2:114634200-114637000	Enhancers	Hela-S3	cervix
14	chr2:114634200-114644800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:114634400-114636800	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr2:114634400-114637000	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr2:114634400-114644200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr2:114634600-114637200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr2:114634600-114637800	Weak transcription	Fetal Brain Male	brain
20	chr2:114634600-114639200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr2:114634600-114639200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr2:114634600-114642000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr2:114634600-114644000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr2:114634600-114644000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr2:114634600-114644000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr2:114634600-114644000	Weak transcription	Pancreas	Pancrea
27	chr2:114634600-114645800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr2:114634600-114646000	Weak transcription	Brain Anterior Caudate	brain
29	chr2:114634600-114646200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr2:114634800-114636800	Enhancers	NHLF	lung
31	chr2:114634800-114637200	Enhancers	Primary T cells from cord blood	blood
32	chr2:114634800-114644200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr2:114635000-114636800	Enhancers	Primary B cells from peripheral blood	blood
34	chr2:114635000-114637000	Enhancers	NHDF-Ad	bronchial
35	chr2:114635000-114637600	Enhancers	HSMMtube	muscle
36	chr2:114635000-114644200	Weak transcription	Esophagus	oesophagus
37	chr2:114635200-114636800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr2:114635400-114646000	Weak transcription	Fetal Muscle Leg	muscle
39	chr2:114635600-114637000	Enhancers	Fetal Stomach	stomach
40	chr2:114635600-114637000	Enhancers	HepG2	liver
41	chr2:114635600-114637200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr2:114635600-114639200	Weak transcription	Primary B cells from cord blood	blood
43	chr2:114635600-114639400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr2:114635600-114643800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr2:114635600-114644000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr2:114635600-114644400	Weak transcription	Fetal Brain Female	brain
47	chr2:114635600-114645800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr2:114635800-114639400	Weak transcription	Thymus	Thymus
49	chr2:114635800-114644000	Weak transcription	Dnd41	blood
50	chr2:114636000-114636800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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