Variant report

Variant	rs10194568
Chromosome Location	chr2:114692814-114692815
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114685102..114687556-chr2:114692653..114695643,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10165272	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10167298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10177263	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10195630	0.98[ASN][1000 genomes]
rs10201959	0.98[ASN][1000 genomes]
rs10202134	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10207551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10207785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10210324	0.98[ASN][1000 genomes]
rs1022412	0.87[ASN][1000 genomes]
rs10496455	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11123218	0.98[ASN][1000 genomes]
rs11887418	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11887772	0.94[ASN][1000 genomes]
rs11889821	0.98[ASN][1000 genomes]
rs11890727	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11893418	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11896388	0.98[ASN][1000 genomes]
rs11899049	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12464791	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12466572	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12613877	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12618683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12711790	0.88[ASN][1000 genomes]
rs12711794	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13003655	0.83[ASN][1000 genomes]
rs13387553	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13396086	0.95[ASN][1000 genomes]
rs13396561	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13405344	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13405706	1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs13418557	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13422248	0.98[ASN][1000 genomes]
rs1403402	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1467291	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1486800	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1504042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1916201	0.95[ASN][1000 genomes]
rs2140263	0.89[CHB][hapmap]
rs2419080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3791736	0.81[ASN][1000 genomes]
rs3791737	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3791739	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3791743	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs4278937	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4338971	0.90[ASN][1000 genomes]
rs55810358	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6542177	0.84[ASN][1000 genomes]
rs6542178	0.88[ASN][1000 genomes]
rs6542181	0.96[ASN][1000 genomes]
rs6542182	0.93[ASN][1000 genomes]
rs6542184	0.95[ASN][1000 genomes]
rs6542186	0.90[ASN][1000 genomes]
rs6711858	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6720853	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6723415	0.90[ASN][1000 genomes]
rs6726327	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6729412	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6734273	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6734839	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs6738134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6740934	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs6743651	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6750503	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6761646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7567097	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7582072	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7585468	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7603501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7603764	0.92[ASN][1000 genomes]
rs9308686	0.88[ASN][1000 genomes]
rs996513	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs996514	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs996515	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
2	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:114667400-114700800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:114667800-114705000	Weak transcription	Esophagus	oesophagus
5	chr2:114668200-114695800	Weak transcription	Psoas Muscle	Psoas
6	chr2:114668200-114704800	Weak transcription	Gastric	stomach
7	chr2:114668400-114696200	Weak transcription	Small Intestine	intestine
8	chr2:114668400-114735000	Weak transcription	Stomach Mucosa	stomach
9	chr2:114668800-114703200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr2:114669400-114693400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:114670800-114693000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:114670800-114717400	Strong transcription	Fetal Thymus	thymus
13	chr2:114670800-114719000	Strong transcription	Dnd41	blood
14	chr2:114671000-114695000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:114671000-114704800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr2:114671000-114720000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:114671200-114694000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:114672000-114723200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:114673000-114703000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:114674400-114715800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:114676000-114706200	Weak transcription	Hela-S3	cervix
22	chr2:114676200-114696200	Weak transcription	Pancreas	Pancrea
23	chr2:114676200-114704800	Weak transcription	Spleen	Spleen
24	chr2:114676600-114695000	Weak transcription	Brain Hippocampus Middle	brain
25	chr2:114676600-114695800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr2:114676600-114719800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr2:114679400-114693000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr2:114680200-114703200	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr2:114680400-114721200	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr2:114681400-114695000	Strong transcription	Liver	Liver
31	chr2:114681600-114717600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr2:114681600-114719400	Strong transcription	NH-A	brain
33	chr2:114681800-114722600	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr2:114682000-114694600	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr2:114682600-114693600	Strong transcription	Primary B cells from cord blood	blood
36	chr2:114682600-114723400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr2:114682600-114725000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr2:114683000-114715800	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr2:114683200-114695200	Strong transcription	Primary B cells from peripheral blood	blood
40	chr2:114683400-114695000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr2:114683400-114696000	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr2:114683400-114719800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr2:114683400-114720000	Strong transcription	NHDF-Ad	bronchial
44	chr2:114683600-114696000	Strong transcription	Duodenum Mucosa	Duodenum
45	chr2:114683800-114693800	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr2:114684000-114694600	Strong transcription	Adipose Nuclei	Adipose
47	chr2:114684200-114695000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr2:114684400-114696000	Weak transcription	Lung	lung
49	chr2:114684800-114697600	Weak transcription	Colonic Mucosa	Colon
50	chr2:114685400-114694400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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