Variant report

Variant	rs13396561
Chromosome Location	chr2:114691458-114691459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114648006..114650237-chr2:114689748..114692234,2	K562	blood:

Variant related genes	Relation type
ENSG00000115091	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10165272	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10167298	0.91[ASN][1000 genomes]
rs10177263	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10194568	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10195630	0.96[ASN][1000 genomes]
rs10201959	0.96[ASN][1000 genomes]
rs10202134	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10207551	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10207785	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10210324	0.96[ASN][1000 genomes]
rs1022412	0.86[ASN][1000 genomes]
rs10496455	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11123218	0.96[ASN][1000 genomes]
rs11887418	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11887772	0.94[ASN][1000 genomes]
rs11889821	0.96[ASN][1000 genomes]
rs11890727	0.96[ASN][1000 genomes]
rs11893418	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11896388	0.96[ASN][1000 genomes]
rs11899049	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12464791	0.96[ASN][1000 genomes]
rs12466572	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12613877	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12618683	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12711790	0.87[ASN][1000 genomes]
rs12711794	0.90[ASN][1000 genomes]
rs13003655	0.82[ASN][1000 genomes]
rs13387553	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13396086	0.93[ASN][1000 genomes]
rs13405344	0.96[ASN][1000 genomes]
rs13405706	0.88[ASN][1000 genomes]
rs13418557	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13422248	0.96[ASN][1000 genomes]
rs1403402	0.95[ASN][1000 genomes]
rs1467291	0.83[ASN][1000 genomes]
rs1486800	0.92[ASN][1000 genomes]
rs1504042	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1916201	0.93[ASN][1000 genomes]
rs2419080	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3791736	0.82[ASN][1000 genomes]
rs3791737	0.96[ASN][1000 genomes]
rs3791739	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3791743	0.90[ASN][1000 genomes]
rs4278937	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4338971	0.88[ASN][1000 genomes]
rs55810358	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6542177	0.83[ASN][1000 genomes]
rs6542178	0.87[ASN][1000 genomes]
rs6542181	0.95[ASN][1000 genomes]
rs6542182	0.91[ASN][1000 genomes]
rs6542184	0.93[ASN][1000 genomes]
rs6542186	0.89[ASN][1000 genomes]
rs6711858	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6720853	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6723415	0.88[ASN][1000 genomes]
rs6726327	0.93[ASN][1000 genomes]
rs6729412	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6734273	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6734839	0.87[ASN][1000 genomes]
rs6738134	0.93[ASN][1000 genomes]
rs6740934	0.88[ASN][1000 genomes]
rs6750503	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6761646	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7567097	0.87[ASN][1000 genomes]
rs7582072	0.96[ASN][1000 genomes]
rs7585468	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7603501	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7603764	0.90[ASN][1000 genomes]
rs9308686	0.87[ASN][1000 genomes]
rs996514	0.90[ASN][1000 genomes]
rs996515	0.90[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
2	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:114665400-114692800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:114667400-114700800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:114667800-114705000	Weak transcription	Esophagus	oesophagus
6	chr2:114668200-114692600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr2:114668200-114695800	Weak transcription	Psoas Muscle	Psoas
8	chr2:114668200-114704800	Weak transcription	Gastric	stomach
9	chr2:114668400-114696200	Weak transcription	Small Intestine	intestine
10	chr2:114668400-114735000	Weak transcription	Stomach Mucosa	stomach
11	chr2:114668600-114692800	Weak transcription	Colon Smooth Muscle	Colon
12	chr2:114668800-114703200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr2:114669400-114693400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:114670800-114693000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:114670800-114717400	Strong transcription	Fetal Thymus	thymus
16	chr2:114670800-114719000	Strong transcription	Dnd41	blood
17	chr2:114671000-114695000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:114671000-114704800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr2:114671000-114720000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:114671200-114692800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:114671200-114694000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr2:114672000-114723200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:114673000-114703000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr2:114674400-114715800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr2:114675000-114691600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr2:114676000-114706200	Weak transcription	Hela-S3	cervix
27	chr2:114676200-114696200	Weak transcription	Pancreas	Pancrea
28	chr2:114676200-114704800	Weak transcription	Spleen	Spleen
29	chr2:114676600-114691800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr2:114676600-114695000	Weak transcription	Brain Hippocampus Middle	brain
31	chr2:114676600-114695800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr2:114676600-114719800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr2:114676800-114691800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr2:114679400-114693000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr2:114679800-114692800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr2:114680200-114703200	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr2:114680400-114721200	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr2:114681400-114695000	Strong transcription	Liver	Liver
39	chr2:114681600-114717600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr2:114681600-114719400	Strong transcription	NH-A	brain
41	chr2:114681800-114722600	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr2:114682000-114694600	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr2:114682600-114693600	Strong transcription	Primary B cells from cord blood	blood
44	chr2:114682600-114723400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr2:114682600-114725000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr2:114683000-114715800	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr2:114683200-114695200	Strong transcription	Primary B cells from peripheral blood	blood
48	chr2:114683400-114695000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr2:114683400-114696000	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr2:114683400-114719800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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