Variant report

Variant	rs7567097
Chromosome Location	chr2:114635685-114635686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:114599733..114601786-chr2:114631688..114635727,3	MCF-7	breast:
2	chr2:114634689..114637227-chr2:114637787..114640303,2	K562	blood:
3	chr2:114634584..114637421-chr2:118770170..118773042,2	MCF-7	breast:
4	chr2:114512137..114514809-chr2:114634552..114636570,3	MCF-7	breast:
5	chr2:114633812..114636075-chr2:114642561..114644204,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115084	Chromatin interaction
ENSG00000228857	Chromatin interaction
ENSG00000125633	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10165272	1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs10167298	0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10177263	0.90[ASN][1000 genomes]
rs10194568	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs10195630	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10201959	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10202134	0.90[ASN][1000 genomes]
rs10207551	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs10207785	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs10210324	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1022412	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11123218	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11887418	0.88[ASN][1000 genomes]
rs11887772	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11889821	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11890727	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11893418	0.90[ASN][1000 genomes]
rs11896388	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11898729	0.89[ASN][1000 genomes]
rs11899049	0.90[CHB][hapmap]
rs12464791	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12466566	0.86[ASN][1000 genomes]
rs12466572	0.89[ASN][1000 genomes]
rs12613877	0.89[ASN][1000 genomes]
rs12618683	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs12711790	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12711794	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13003655	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13387553	0.88[ASN][1000 genomes]
rs13388876	0.89[ASN][1000 genomes]
rs13396086	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13396561	0.87[ASN][1000 genomes]
rs13401311	0.86[ASN][1000 genomes]
rs13405344	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13405706	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13418557	0.86[ASN][1000 genomes]
rs13422248	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1403402	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1467291	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1486800	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1504042	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs17045275	0.89[ASN][1000 genomes]
rs1916201	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1984794	0.88[ASN][1000 genomes]
rs2140263	0.89[CHB][hapmap];0.86[ASN][1000 genomes]
rs2419080	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs28423681	0.86[ASN][1000 genomes]
rs3791737	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3791739	0.92[ASN][1000 genomes]
rs3791743	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4278937	0.98[ASN][1000 genomes]
rs4338971	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55685338	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55810358	0.90[ASN][1000 genomes]
rs6542177	0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6542178	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6542181	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6542182	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6542184	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6542186	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6711858	0.92[ASN][1000 genomes]
rs6720853	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6723415	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6726327	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6729412	0.88[ASN][1000 genomes]
rs6734839	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738134	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6740934	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6743651	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs6750503	0.86[ASN][1000 genomes]
rs6760347	0.88[ASN][1000 genomes]
rs6761646	1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs7582072	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7585468	0.98[ASN][1000 genomes]
rs7595941	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7603501	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs7603764	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9308686	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs996513	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs996514	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs996515	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114621200-114639600	Weak transcription	GM12878-XiMat	blood
2	chr2:114621400-114638400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:114631400-114644000	Weak transcription	Spleen	Spleen
4	chr2:114631600-114636400	Weak transcription	Left Ventricle	heart
5	chr2:114631800-114639000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:114632600-114636400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:114633400-114636000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr2:114633400-114636400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr2:114633600-114636000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr2:114633800-114636000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr2:114633800-114636000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr2:114633800-114636200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr2:114633800-114636800	Enhancers	Fetal Intestine Large	intestine
14	chr2:114633800-114636800	Enhancers	HMEC	breast
15	chr2:114633800-114637200	Enhancers	Stomach Mucosa	stomach
16	chr2:114633800-114646800	Weak transcription	Aorta	Aorta
17	chr2:114634200-114636000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:114634200-114636000	Enhancers	K562	blood
19	chr2:114634200-114636800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:114634200-114636800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:114634200-114636800	Enhancers	Fetal Intestine Small	intestine
22	chr2:114634200-114636800	Enhancers	A549	lung
23	chr2:114634200-114637000	Enhancers	Hela-S3	cervix
24	chr2:114634200-114644800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr2:114634400-114636800	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr2:114634400-114637000	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr2:114634400-114644200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr2:114634600-114635800	Enhancers	Fetal Thymus	thymus
29	chr2:114634600-114635800	Enhancers	Dnd41	blood
30	chr2:114634600-114636400	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr2:114634600-114637200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr2:114634600-114637800	Weak transcription	Fetal Brain Male	brain
33	chr2:114634600-114639200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr2:114634600-114639200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr2:114634600-114642000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr2:114634600-114644000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr2:114634600-114644000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr2:114634600-114644000	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr2:114634600-114644000	Weak transcription	Pancreas	Pancrea
40	chr2:114634600-114645800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr2:114634600-114646000	Weak transcription	Brain Anterior Caudate	brain
42	chr2:114634600-114646200	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr2:114634800-114635800	Enhancers	Thymus	Thymus
44	chr2:114634800-114636000	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr2:114634800-114636000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr2:114634800-114636600	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr2:114634800-114636600	Enhancers	NHEK	skin
48	chr2:114634800-114636800	Enhancers	NHLF	lung
49	chr2:114634800-114637200	Enhancers	Primary T cells from cord blood	blood
50	chr2:114634800-114644200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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