Variant report

Variant	rs55810358
Chromosome Location	chr2:114672771-114672772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:114672608..114674556-chr2:114681471..114684124,2	K562	blood:
2	chr2:114672608..114675280-chr2:114681471..114684124,3	K562	blood:
3	chr2:114650237..114652032-chr2:114672762..114674303,2	MCF-7	breast:
4	chr2:114664146..114665930-chr2:114672543..114675415,2	K562	blood:
5	chr2:114645266..114650561-chr2:114670334..114676393,6	MCF-7	breast:
6	chr2:114662832..114665997-chr2:114671903..114675415,3	K562	blood:
7	chr2:114645055..114647388-chr2:114670629..114673170,2	K562	blood:
8	chr2:114647586..114650445-chr2:114670762..114673318,2	K562	blood:
9	chr2:114668742..114673140-chr2:114673831..114676869,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000270019	Chromatin interaction
ENSG00000115091	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10165272	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10167298	0.95[ASN][1000 genomes]
rs10177263	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10194568	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10195630	1.00[ASN][1000 genomes]
rs10201959	1.00[ASN][1000 genomes]
rs10202134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207551	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207785	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10210324	1.00[ASN][1000 genomes]
rs1022412	0.89[ASN][1000 genomes]
rs10496455	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11123218	1.00[ASN][1000 genomes]
rs11887418	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11887772	0.96[ASN][1000 genomes]
rs11889821	1.00[ASN][1000 genomes]
rs11890727	1.00[ASN][1000 genomes]
rs11893418	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11896388	1.00[ASN][1000 genomes]
rs11898729	0.80[ASN][1000 genomes]
rs11899049	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12464791	1.00[ASN][1000 genomes]
rs12466572	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12613877	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12618683	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12711790	0.90[ASN][1000 genomes]
rs12711794	0.93[ASN][1000 genomes]
rs13003655	0.86[ASN][1000 genomes]
rs13387553	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13388876	0.80[ASN][1000 genomes]
rs13396086	0.97[ASN][1000 genomes]
rs13396561	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13405344	1.00[ASN][1000 genomes]
rs13405706	0.92[ASN][1000 genomes]
rs13418557	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13422248	1.00[ASN][1000 genomes]
rs1403402	0.98[ASN][1000 genomes]
rs1467291	0.86[ASN][1000 genomes]
rs1486800	0.96[ASN][1000 genomes]
rs1504042	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17045275	0.80[ASN][1000 genomes]
rs1916201	0.97[ASN][1000 genomes]
rs2419080	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3791736	0.83[ASN][1000 genomes]
rs3791737	1.00[ASN][1000 genomes]
rs3791739	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3791743	0.94[ASN][1000 genomes]
rs4278937	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4338971	0.92[ASN][1000 genomes]
rs6542177	0.86[ASN][1000 genomes]
rs6542178	0.90[ASN][1000 genomes]
rs6542181	0.98[ASN][1000 genomes]
rs6542182	0.95[ASN][1000 genomes]
rs6542184	0.97[ASN][1000 genomes]
rs6542186	0.93[ASN][1000 genomes]
rs6711858	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6720853	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6723415	0.92[ASN][1000 genomes]
rs6726327	0.97[ASN][1000 genomes]
rs6729412	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6734273	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6734839	0.90[ASN][1000 genomes]
rs6738134	0.97[ASN][1000 genomes]
rs6740934	0.92[ASN][1000 genomes]
rs6743651	0.84[ASN][1000 genomes]
rs6750503	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6761646	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7567097	0.90[ASN][1000 genomes]
rs7582072	1.00[ASN][1000 genomes]
rs7585468	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7595941	0.81[ASN][1000 genomes]
rs7603501	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603764	0.94[ASN][1000 genomes]
rs9308686	0.90[ASN][1000 genomes]
rs996514	0.94[ASN][1000 genomes]
rs996515	0.94[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114649200-114673200	Weak transcription	Placenta	Placenta
2	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
3	chr2:114652400-114686000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:114654600-114674600	Weak transcription	Hela-S3	cervix
6	chr2:114654600-114675400	Weak transcription	Fetal Stomach	stomach
7	chr2:114658000-114675400	Weak transcription	Aorta	Aorta
8	chr2:114658000-114689400	Weak transcription	Fetal Heart	heart
9	chr2:114658400-114674200	Weak transcription	Fetal Intestine Large	intestine
10	chr2:114661200-114683800	Weak transcription	Colonic Mucosa	Colon
11	chr2:114662200-114675200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr2:114662400-114676200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr2:114662600-114674400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr2:114662800-114690600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:114663600-114672800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr2:114663800-114674600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr2:114663800-114674800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:114664400-114674600	Weak transcription	Fetal Lung	lung
19	chr2:114665400-114675200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr2:114665400-114692800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr2:114667400-114700800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr2:114667800-114705000	Weak transcription	Esophagus	oesophagus
23	chr2:114668000-114675200	Weak transcription	Lung	lung
24	chr2:114668000-114675600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr2:114668000-114676000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr2:114668000-114690800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr2:114668200-114675000	Weak transcription	Ovary	ovary
28	chr2:114668200-114675400	Weak transcription	Pancreas	Pancrea
29	chr2:114668200-114692600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr2:114668200-114695800	Weak transcription	Psoas Muscle	Psoas
31	chr2:114668200-114704800	Weak transcription	Gastric	stomach
32	chr2:114668400-114674200	Weak transcription	NHLF	lung
33	chr2:114668400-114674800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr2:114668400-114675200	Weak transcription	Left Ventricle	heart
35	chr2:114668400-114675400	Weak transcription	Thymus	Thymus
36	chr2:114668400-114696200	Weak transcription	Small Intestine	intestine
37	chr2:114668400-114735000	Weak transcription	Stomach Mucosa	stomach
38	chr2:114668600-114674800	Weak transcription	Fetal Brain Female	brain
39	chr2:114668600-114674800	Weak transcription	HSMMtube	muscle
40	chr2:114668600-114692800	Weak transcription	Colon Smooth Muscle	Colon
41	chr2:114668800-114674600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr2:114668800-114675000	Weak transcription	Fetal Kidney	kidney
43	chr2:114668800-114675400	Weak transcription	Brain Hippocampus Middle	brain
44	chr2:114668800-114675400	Weak transcription	Spleen	Spleen
45	chr2:114668800-114676000	Weak transcription	Fetal Intestine Small	intestine
46	chr2:114668800-114703200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr2:114669000-114675200	Weak transcription	Brain Anterior Caudate	brain
48	chr2:114669000-114675400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr2:114669000-114686400	Weak transcription	Brain Angular Gyrus	brain
50	chr2:114669200-114673000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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