Variant report

Variant	rs6711858
Chromosome Location	chr2:114655816-114655817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:114655812..114657969-chr2:114659213..114661113,3	MCF-7	breast:
2	chr2:114653670..114656368-chr2:114668759..114670499,2	MCF-7	breast:
3	chr2:114645610..114649008-chr2:114652847..114656238,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115091	Chromatin interaction
ENSG00000270019	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10165272	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10167298	0.93[ASN][1000 genomes]
rs10177263	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10194568	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10195630	0.98[ASN][1000 genomes]
rs10201959	0.98[ASN][1000 genomes]
rs10202134	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10207551	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10207785	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10210324	0.98[ASN][1000 genomes]
rs1022412	0.90[ASN][1000 genomes]
rs10496455	0.81[ASN][1000 genomes]
rs11123218	0.98[ASN][1000 genomes]
rs11887418	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11887772	0.95[ASN][1000 genomes]
rs11889821	0.98[ASN][1000 genomes]
rs11890727	0.98[ASN][1000 genomes]
rs11893418	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11896388	0.98[ASN][1000 genomes]
rs11898729	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11899049	0.86[ASN][1000 genomes]
rs12464791	0.98[ASN][1000 genomes]
rs12466572	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12613877	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12618683	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12711790	0.90[ASN][1000 genomes]
rs12711794	0.92[ASN][1000 genomes]
rs13003655	0.87[ASN][1000 genomes]
rs13387553	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13388876	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13396086	0.96[ASN][1000 genomes]
rs13396561	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13405344	0.98[ASN][1000 genomes]
rs13405706	0.93[ASN][1000 genomes]
rs13418557	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13422248	0.98[ASN][1000 genomes]
rs1403402	1.00[ASN][1000 genomes]
rs1467291	0.88[ASN][1000 genomes]
rs1486800	0.94[ASN][1000 genomes]
rs1504042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17045275	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1916201	0.98[ASN][1000 genomes]
rs1984794	0.80[ASN][1000 genomes]
rs2419080	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3791736	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3791737	0.98[ASN][1000 genomes]
rs3791739	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3791743	0.96[ASN][1000 genomes]
rs4278937	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4338971	0.93[ASN][1000 genomes]
rs55810358	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6542177	0.88[ASN][1000 genomes]
rs6542178	0.92[ASN][1000 genomes]
rs6542181	1.00[ASN][1000 genomes]
rs6542182	0.96[ASN][1000 genomes]
rs6542184	0.96[ASN][1000 genomes]
rs6542186	0.91[ASN][1000 genomes]
rs6720853	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6723415	0.93[ASN][1000 genomes]
rs6726327	0.96[ASN][1000 genomes]
rs6729412	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6734273	0.83[ASN][1000 genomes]
rs6734839	0.92[ASN][1000 genomes]
rs6738134	0.96[ASN][1000 genomes]
rs6740934	0.93[ASN][1000 genomes]
rs6743651	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6750503	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6760347	0.80[ASN][1000 genomes]
rs6761646	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7567097	0.92[ASN][1000 genomes]
rs7582072	0.98[ASN][1000 genomes]
rs7585468	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7595941	0.83[ASN][1000 genomes]
rs7603501	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7603764	0.96[ASN][1000 genomes]
rs9308686	0.92[ASN][1000 genomes]
rs996514	0.96[ASN][1000 genomes]
rs996515	0.96[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114648600-114657800	Weak transcription	Gastric	stomach
2	chr2:114648600-114667600	Weak transcription	Lung	lung
3	chr2:114649200-114661200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr2:114649200-114673200	Weak transcription	Placenta	Placenta
5	chr2:114649600-114661000	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:114650200-114658400	Enhancers	Adipose Nuclei	Adipose
7	chr2:114650200-114658400	Enhancers	Stomach Mucosa	stomach
8	chr2:114650200-114661000	Weak transcription	Right Ventricle	heart
9	chr2:114651600-114658000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr2:114652000-114656000	Enhancers	NHLF	lung
11	chr2:114652000-114658000	Weak transcription	Pancreas	Pancrea
12	chr2:114652000-114667600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:114652000-114667600	Weak transcription	Esophagus	oesophagus
14	chr2:114652200-114658000	Enhancers	Duodenum Mucosa	Duodenum
15	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
16	chr2:114652400-114656400	Weak transcription	Brain Germinal Matrix	brain
17	chr2:114652400-114656800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:114652400-114657200	Enhancers	HUVEC	blood vessel
19	chr2:114652400-114657800	Weak transcription	Aorta	Aorta
20	chr2:114652400-114657800	Weak transcription	Colonic Mucosa	Colon
21	chr2:114652400-114660400	Weak transcription	Fetal Kidney	kidney
22	chr2:114652400-114686000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr2:114652800-114656000	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr2:114653000-114658400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr2:114653000-114659600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr2:114653200-114656000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr2:114653200-114658200	Enhancers	Liver	Liver
28	chr2:114653200-114658400	Enhancers	A549	lung
29	chr2:114653200-114659200	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr2:114653200-114662400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr2:114653400-114656000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr2:114653400-114659000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr2:114653400-114662000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr2:114653400-114672600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr2:114653600-114656000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr2:114653600-114658200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr2:114653800-114657400	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr2:114653800-114658000	Weak transcription	Spleen	Spleen
40	chr2:114653800-114658400	Enhancers	Osteobl	bone
41	chr2:114653800-114658600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr2:114653800-114659000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr2:114654000-114657400	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr2:114654000-114657600	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr2:114654000-114660400	Enhancers	Primary B cells from peripheral blood	blood
46	chr2:114654000-114670000	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr2:114654200-114656000	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr2:114654200-114656000	Enhancers	Brain Anterior Caudate	brain
49	chr2:114654200-114658000	Enhancers	Colon Smooth Muscle	Colon
50	chr2:114654200-114659200	Enhancers	Monocytes-CD14+_RO01746	blood

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