Variant report

Variant	rs1504042
Chromosome Location	chr2:114654527-114654528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:114510034..114517579-chr2:114643441..114655407,23	MCF-7	breast:
2	chr2:114512332..114515034-chr2:114651411..114654635,3	MCF-7	breast:
3	chr2:114653670..114656368-chr2:114668759..114670499,2	MCF-7	breast:
4	chr2:114645610..114649008-chr2:114652847..114656238,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115091	Chromatin interaction
ENSG00000270019	Chromatin interaction
ENSG00000115084	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10165272	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10167298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10177263	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10194568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10195630	0.98[ASN][1000 genomes]
rs10201959	0.98[ASN][1000 genomes]
rs10202134	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10207551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10207785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10210324	0.98[ASN][1000 genomes]
rs1022412	0.90[ASN][1000 genomes]
rs10496455	0.81[ASN][1000 genomes]
rs11123218	0.98[ASN][1000 genomes]
rs11887418	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11887772	0.95[ASN][1000 genomes]
rs11889821	0.98[ASN][1000 genomes]
rs11890727	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11893418	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11896388	0.98[ASN][1000 genomes]
rs11898729	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11899049	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs12464791	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12466572	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12613877	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12618683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12711790	0.90[ASN][1000 genomes]
rs12711794	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13003655	0.87[ASN][1000 genomes]
rs13387553	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13388876	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13396086	0.96[ASN][1000 genomes]
rs13396561	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13405344	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13405706	1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs13418557	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13422248	0.98[ASN][1000 genomes]
rs1403402	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1467291	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs1486800	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17045275	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1916201	0.98[ASN][1000 genomes]
rs1984794	0.80[ASN][1000 genomes]
rs2140263	0.89[CHB][hapmap]
rs2419080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3791736	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3791737	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3791739	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3791743	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs4278937	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4338971	0.93[ASN][1000 genomes]
rs55810358	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6542177	0.88[ASN][1000 genomes]
rs6542178	0.92[ASN][1000 genomes]
rs6542181	1.00[ASN][1000 genomes]
rs6542182	0.96[ASN][1000 genomes]
rs6542184	0.96[ASN][1000 genomes]
rs6542186	0.91[ASN][1000 genomes]
rs6711858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6720853	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6723415	0.93[ASN][1000 genomes]
rs6726327	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6729412	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6734273	0.83[ASN][1000 genomes]
rs6734839	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs6738134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6740934	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs6743651	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6750503	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6760347	0.80[ASN][1000 genomes]
rs6761646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7567097	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs7582072	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7585468	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7595941	0.83[ASN][1000 genomes]
rs7603501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7603764	0.96[ASN][1000 genomes]
rs9308686	0.92[ASN][1000 genomes]
rs996513	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs996514	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs996515	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114648600-114657800	Weak transcription	Gastric	stomach
2	chr2:114648600-114667600	Weak transcription	Lung	lung
3	chr2:114649200-114661200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr2:114649200-114673200	Weak transcription	Placenta	Placenta
5	chr2:114649400-114655200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:114649600-114661000	Weak transcription	Fetal Muscle Leg	muscle
7	chr2:114649800-114655600	Enhancers	Small Intestine	intestine
8	chr2:114650000-114655600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr2:114650200-114654600	Genic enhancers	Dnd41	blood
10	chr2:114650200-114658400	Enhancers	Adipose Nuclei	Adipose
11	chr2:114650200-114658400	Enhancers	Stomach Mucosa	stomach
12	chr2:114650200-114661000	Weak transcription	Right Ventricle	heart
13	chr2:114650400-114655400	Weak transcription	Fetal Intestine Large	intestine
14	chr2:114651200-114655800	Enhancers	Brain Hippocampus Middle	brain
15	chr2:114651400-114654600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr2:114651600-114658000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr2:114652000-114656000	Enhancers	NHLF	lung
18	chr2:114652000-114658000	Weak transcription	Pancreas	Pancrea
19	chr2:114652000-114667600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:114652000-114667600	Weak transcription	Esophagus	oesophagus
21	chr2:114652200-114654600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr2:114652200-114658000	Enhancers	Duodenum Mucosa	Duodenum
23	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
24	chr2:114652400-114654600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr2:114652400-114654600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr2:114652400-114655200	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr2:114652400-114655400	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr2:114652400-114655400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr2:114652400-114655400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr2:114652400-114655800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr2:114652400-114656400	Weak transcription	Brain Germinal Matrix	brain
32	chr2:114652400-114656800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr2:114652400-114657200	Enhancers	HUVEC	blood vessel
34	chr2:114652400-114657800	Weak transcription	Aorta	Aorta
35	chr2:114652400-114657800	Weak transcription	Colonic Mucosa	Colon
36	chr2:114652400-114660400	Weak transcription	Fetal Kidney	kidney
37	chr2:114652400-114686000	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr2:114652600-114655400	Enhancers	HepG2	liver
39	chr2:114652800-114655400	Enhancers	Primary T cells fromperipheralblood	blood
40	chr2:114652800-114656000	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr2:114653000-114654600	Enhancers	Right Atrium	heart
42	chr2:114653000-114654600	Enhancers	NH-A	brain
43	chr2:114653000-114654600	Genic enhancers	NHEK	skin
44	chr2:114653000-114655000	Enhancers	HMEC	breast
45	chr2:114653000-114655800	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr2:114653000-114658400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr2:114653000-114659600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr2:114653200-114654600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr2:114653200-114655200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr2:114653200-114655600	Weak transcription	Fetal Brain Female	brain

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