Variant report

Variant	rs11123218
Chromosome Location	chr2:114677661-114677662
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:114648278..114650934-chr2:114677225..114679132,2	K562	blood:
2	chr2:114512877..114515552-chr2:114673985..114678016,3	K562	blood:
3	chr2:114649589..114651914-chr2:114675375..114678075,2	MCF-7	breast:
4	chr2:114512877..114514598-chr2:114675110..114678016,2	K562	blood:
5	chr2:114676796..114679000-chr2:114684660..114686527,3	K562	blood:

Variant related genes	Relation type
ENSG00000115084	Chromatin interaction
ENSG00000115091	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10165272	1.00[ASN][1000 genomes]
rs10167298	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10177263	1.00[ASN][1000 genomes]
rs10194568	0.98[ASN][1000 genomes]
rs10195630	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10201959	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202134	1.00[ASN][1000 genomes]
rs10207551	1.00[ASN][1000 genomes]
rs10207785	1.00[ASN][1000 genomes]
rs10210324	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1022412	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10496455	0.82[ASN][1000 genomes]
rs11887418	0.97[ASN][1000 genomes]
rs11887772	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11889821	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11890727	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11893418	1.00[ASN][1000 genomes]
rs11896388	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11898729	0.80[ASN][1000 genomes]
rs11899049	0.88[ASN][1000 genomes]
rs12464791	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12466572	0.98[ASN][1000 genomes]
rs12613877	0.99[ASN][1000 genomes]
rs12618683	0.98[ASN][1000 genomes]
rs12711790	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12711794	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13003655	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13387553	0.97[ASN][1000 genomes]
rs13388876	0.80[ASN][1000 genomes]
rs13396086	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13396561	0.96[ASN][1000 genomes]
rs13405344	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13405706	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13418557	0.96[ASN][1000 genomes]
rs13422248	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403402	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1467291	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1486800	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1504042	0.98[ASN][1000 genomes]
rs17045275	0.80[ASN][1000 genomes]
rs1916201	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2419080	0.98[ASN][1000 genomes]
rs3791736	0.83[ASN][1000 genomes]
rs3791737	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3791739	0.98[ASN][1000 genomes]
rs3791743	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4278937	0.92[ASN][1000 genomes]
rs4338971	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55810358	1.00[ASN][1000 genomes]
rs6542177	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6542178	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6542181	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6542182	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6542184	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6542186	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6711858	0.98[ASN][1000 genomes]
rs6720853	0.90[ASN][1000 genomes]
rs6723415	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6726327	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6729412	0.97[ASN][1000 genomes]
rs6734273	0.85[ASN][1000 genomes]
rs6734839	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6738134	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6740934	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6743651	0.84[ASN][1000 genomes]
rs6750503	0.96[ASN][1000 genomes]
rs6761646	0.92[ASN][1000 genomes]
rs7567097	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7582072	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7585468	0.92[ASN][1000 genomes]
rs7595941	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7603501	1.00[ASN][1000 genomes]
rs7603764	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9308686	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs996514	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs996515	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
2	chr2:114652400-114686000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:114658000-114689400	Weak transcription	Fetal Heart	heart
5	chr2:114661200-114683800	Weak transcription	Colonic Mucosa	Colon
6	chr2:114662800-114690600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:114665400-114692800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:114667400-114700800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:114667800-114705000	Weak transcription	Esophagus	oesophagus
10	chr2:114668000-114690800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:114668200-114692600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr2:114668200-114695800	Weak transcription	Psoas Muscle	Psoas
13	chr2:114668200-114704800	Weak transcription	Gastric	stomach
14	chr2:114668400-114696200	Weak transcription	Small Intestine	intestine
15	chr2:114668400-114735000	Weak transcription	Stomach Mucosa	stomach
16	chr2:114668600-114692800	Weak transcription	Colon Smooth Muscle	Colon
17	chr2:114668800-114703200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr2:114669000-114686400	Weak transcription	Brain Angular Gyrus	brain
19	chr2:114669200-114686400	Weak transcription	Brain Substantia Nigra	brain
20	chr2:114669400-114693400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr2:114670200-114679800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr2:114670200-114680800	Strong transcription	A549	lung
23	chr2:114670200-114680800	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr2:114670800-114679400	Strong transcription	Primary B cells from peripheral blood	blood
25	chr2:114670800-114680600	Strong transcription	Primary B cells from cord blood	blood
26	chr2:114670800-114693000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:114670800-114717400	Strong transcription	Fetal Thymus	thymus
28	chr2:114670800-114719000	Strong transcription	Dnd41	blood
29	chr2:114671000-114677800	Strong transcription	NH-A	brain
30	chr2:114671000-114678600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr2:114671000-114679000	Strong transcription	HSMM	muscle
32	chr2:114671000-114681200	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr2:114671000-114684600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr2:114671000-114695000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr2:114671000-114704800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr2:114671000-114720000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:114671200-114692800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr2:114671200-114694000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr2:114671600-114678400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr2:114672000-114723200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr2:114672400-114679000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr2:114672400-114682200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
43	chr2:114672800-114678600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr2:114673000-114703000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr2:114673200-114679200	Strong transcription	Placenta	Placenta
46	chr2:114674000-114678200	Strong transcription	GM12878-XiMat	blood
47	chr2:114674200-114677800	Strong transcription	Adipose Nuclei	Adipose
48	chr2:114674400-114678000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr2:114674400-114715800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr2:114674600-114678000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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