Variant report

Variant	rs12618683
Chromosome Location	chr2:114672304-114672305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:114669911..114672374-chr2:114673667..114676580,4	K562	blood:
2	chr2:114645266..114650561-chr2:114670334..114676393,6	MCF-7	breast:
3	chr2:114662832..114665997-chr2:114671903..114675415,3	K562	blood:
4	chr2:114645055..114647388-chr2:114670629..114673170,2	K562	blood:
5	chr2:114647586..114650445-chr2:114670762..114673318,2	K562	blood:
6	chr2:114668742..114673140-chr2:114673831..114676869,6	K562	blood:

Variant related genes	Relation type
ENSG00000270019	Chromatin interaction
ENSG00000115091	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10165272	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10167298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10177263	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10194568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10195630	0.98[ASN][1000 genomes]
rs10201959	0.98[ASN][1000 genomes]
rs10202134	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10207551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10207785	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10210324	0.98[ASN][1000 genomes]
rs1022412	0.88[ASN][1000 genomes]
rs10496455	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11123218	0.98[ASN][1000 genomes]
rs11887418	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11887772	0.95[ASN][1000 genomes]
rs11889821	0.98[ASN][1000 genomes]
rs11890727	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.98[ASN][1000 genomes]
rs11893418	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11896388	0.98[ASN][1000 genomes]
rs11898729	0.81[ASN][1000 genomes]
rs11899049	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12464791	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12466572	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12473069	0.85[MEX][hapmap]
rs12613877	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12711790	0.89[ASN][1000 genomes]
rs12711794	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13003655	0.84[ASN][1000 genomes]
rs13387553	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13388876	0.81[ASN][1000 genomes]
rs13396086	0.96[ASN][1000 genomes]
rs13396561	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13405344	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13405706	1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs13418557	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13422248	0.98[ASN][1000 genomes]
rs1403402	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1467291	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.85[ASN][1000 genomes]
rs1486800	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1504042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17045275	0.81[ASN][1000 genomes]
rs1916201	0.96[ASN][1000 genomes]
rs2140263	0.89[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs2419080	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3791736	0.84[ASN][1000 genomes]
rs3791737	0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3791739	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3791743	1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs4278937	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4338971	0.90[ASN][1000 genomes]
rs55810358	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6542177	0.85[ASN][1000 genomes]
rs6542178	0.89[ASN][1000 genomes]
rs6542181	0.97[ASN][1000 genomes]
rs6542182	0.93[ASN][1000 genomes]
rs6542184	0.96[ASN][1000 genomes]
rs6542186	0.91[ASN][1000 genomes]
rs6711858	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6720853	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6723415	0.90[ASN][1000 genomes]
rs6726327	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6729412	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6734273	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6734839	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs6738134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6740934	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs6743651	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs6750503	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6761646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7567097	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs7582072	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7585468	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7595941	0.83[ASN][1000 genomes]
rs7603501	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7603764	0.93[ASN][1000 genomes]
rs9308686	0.89[ASN][1000 genomes]
rs996513	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs996514	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs996515	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114649200-114673200	Weak transcription	Placenta	Placenta
2	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
3	chr2:114652400-114686000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:114653400-114672600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:114654600-114674600	Weak transcription	Hela-S3	cervix
7	chr2:114654600-114675400	Weak transcription	Fetal Stomach	stomach
8	chr2:114655800-114672600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr2:114655800-114672600	Weak transcription	NHEK	skin
10	chr2:114658000-114675400	Weak transcription	Aorta	Aorta
11	chr2:114658000-114689400	Weak transcription	Fetal Heart	heart
12	chr2:114658400-114674200	Weak transcription	Fetal Intestine Large	intestine
13	chr2:114661200-114683800	Weak transcription	Colonic Mucosa	Colon
14	chr2:114662200-114675200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr2:114662400-114672400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr2:114662400-114676200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr2:114662600-114672400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr2:114662600-114674400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr2:114662800-114690600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr2:114663600-114672600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr2:114663600-114672800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:114663800-114674600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr2:114663800-114674800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr2:114664400-114674600	Weak transcription	Fetal Lung	lung
25	chr2:114665400-114675200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr2:114665400-114692800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr2:114667400-114700800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr2:114667800-114705000	Weak transcription	Esophagus	oesophagus
29	chr2:114668000-114675200	Weak transcription	Lung	lung
30	chr2:114668000-114675600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr2:114668000-114676000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr2:114668000-114690800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr2:114668200-114672600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr2:114668200-114675000	Weak transcription	Ovary	ovary
35	chr2:114668200-114675400	Weak transcription	Pancreas	Pancrea
36	chr2:114668200-114692600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr2:114668200-114695800	Weak transcription	Psoas Muscle	Psoas
38	chr2:114668200-114704800	Weak transcription	Gastric	stomach
39	chr2:114668400-114672600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr2:114668400-114674200	Weak transcription	NHLF	lung
41	chr2:114668400-114674800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr2:114668400-114675200	Weak transcription	Left Ventricle	heart
43	chr2:114668400-114675400	Weak transcription	Thymus	Thymus
44	chr2:114668400-114696200	Weak transcription	Small Intestine	intestine
45	chr2:114668400-114735000	Weak transcription	Stomach Mucosa	stomach
46	chr2:114668600-114672600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr2:114668600-114674800	Weak transcription	Fetal Brain Female	brain
48	chr2:114668600-114674800	Weak transcription	HSMMtube	muscle
49	chr2:114668600-114692800	Weak transcription	Colon Smooth Muscle	Colon
50	chr2:114668800-114672400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links