Variant report

Variant	rs55688156
Chromosome Location	chr12:87712136-87712137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10219727	1.00[EUR][1000 genomes]
rs11104427	1.00[EUR][1000 genomes]
rs55717936	1.00[EUR][1000 genomes]
rs66494542	1.00[EUR][1000 genomes]
rs66553127	1.00[EUR][1000 genomes]
rs67472304	1.00[EUR][1000 genomes]
rs67554775	0.92[EUR][1000 genomes]
rs7296885	0.92[EUR][1000 genomes]
rs73194376	0.87[EUR][1000 genomes]
rs73194379	0.87[EUR][1000 genomes]
rs73194393	0.92[EUR][1000 genomes]
rs73196305	0.92[EUR][1000 genomes]
rs73196309	0.92[EUR][1000 genomes]
rs73196310	0.92[EUR][1000 genomes]
rs73196312	0.92[EUR][1000 genomes]
rs73196332	0.92[EUR][1000 genomes]
rs73196334	0.92[EUR][1000 genomes]
rs73196336	0.92[EUR][1000 genomes]
rs73196341	0.92[EUR][1000 genomes]
rs73196349	0.92[EUR][1000 genomes]
rs73196352	0.92[EUR][1000 genomes]
rs73198215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73198230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv427918	chr12:87647585-87786660	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv826470	chr12:87710443-87715669	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87708800-87712400	Weak transcription	Aorta	Aorta
2	chr12:87711000-87712400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr12:87711000-87712400	Enhancers	Osteobl	bone
4	chr12:87711000-87712600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr12:87711000-87712800	Enhancers	HUVEC	blood vessel
6	chr12:87711800-87712200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr12:87712000-87712200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:87712000-87712200	Enhancers	NH-A	brain
9	chr12:87712000-87712200	Enhancers	NHLF	lung
10	chr12:87712000-87712400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:87712000-87712600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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