Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10219727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11104427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55688156	1.00[EUR][1000 genomes]
rs55717936	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66494542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66553127	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67554775	0.92[EUR][1000 genomes]
rs7296885	0.92[EUR][1000 genomes]
rs73194376	0.87[EUR][1000 genomes]
rs73194379	0.87[EUR][1000 genomes]
rs73194393	0.92[EUR][1000 genomes]
rs73196305	0.92[EUR][1000 genomes]
rs73196309	0.92[EUR][1000 genomes]
rs73196310	0.92[EUR][1000 genomes]
rs73196312	0.92[EUR][1000 genomes]
rs73196332	0.92[EUR][1000 genomes]
rs73196334	0.92[EUR][1000 genomes]
rs73196336	0.92[EUR][1000 genomes]
rs73196341	0.92[EUR][1000 genomes]
rs73196349	0.92[EUR][1000 genomes]
rs73196352	0.92[EUR][1000 genomes]
rs73198215	1.00[EUR][1000 genomes]
rs73198230	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv427918	chr12:87647585-87786660	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv826470	chr12:87710443-87715669	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87712200-87716200	Weak transcription	NH-A	brain
2	chr12:87712400-87716400	Weak transcription	Osteobl	bone
3	chr12:87712400-87716600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr12:87712600-87718000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr12:87712800-87716000	Weak transcription	Aorta	Aorta
6	chr12:87714000-87718400	Enhancers	HUVEC	blood vessel
7	chr12:87714800-87716200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr12:87714800-87716400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr12:87714800-87716600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr12:87714800-87716800	Weak transcription	Muscle Satellite Cultured Cells	--

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