Variant report

Variant	rs7296885
Chromosome Location	chr12:87706114-87706115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10219727	0.92[EUR][1000 genomes]
rs11104427	0.92[EUR][1000 genomes]
rs55688156	0.92[EUR][1000 genomes]
rs55717936	0.92[EUR][1000 genomes]
rs66494542	0.92[EUR][1000 genomes]
rs66553127	0.92[EUR][1000 genomes]
rs67472304	0.92[EUR][1000 genomes]
rs67554775	1.00[EUR][1000 genomes]
rs73194376	0.96[EUR][1000 genomes]
rs73194379	0.96[EUR][1000 genomes]
rs73194393	1.00[EUR][1000 genomes]
rs73196305	1.00[EUR][1000 genomes]
rs73196309	1.00[EUR][1000 genomes]
rs73196310	1.00[EUR][1000 genomes]
rs73196312	1.00[EUR][1000 genomes]
rs73196332	1.00[EUR][1000 genomes]
rs73196334	1.00[EUR][1000 genomes]
rs73196336	1.00[EUR][1000 genomes]
rs73196341	1.00[EUR][1000 genomes]
rs73196349	1.00[EUR][1000 genomes]
rs73196352	1.00[EUR][1000 genomes]
rs73198215	0.92[EUR][1000 genomes]
rs73198230	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv427918	chr12:87647585-87786660	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87703200-87706200	Enhancers	Primary B cells from peripheral blood	blood
2	chr12:87705800-87711000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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