Variant report
| Variant | rs73194393 |
|---|---|
| Chromosome Location | chr12:87652306-87652307 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:87646760..87648711-chr12:87650692..87652796,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10219727 | 0.92[EUR][1000 genomes] |
| rs11104427 | 0.92[EUR][1000 genomes] |
| rs55688156 | 0.92[EUR][1000 genomes] |
| rs55717936 | 0.92[EUR][1000 genomes] |
| rs66494542 | 0.92[EUR][1000 genomes] |
| rs66553127 | 0.92[EUR][1000 genomes] |
| rs67472304 | 0.92[EUR][1000 genomes] |
| rs67554775 | 1.00[EUR][1000 genomes] |
| rs7296885 | 1.00[EUR][1000 genomes] |
| rs73194376 | 0.96[EUR][1000 genomes] |
| rs73194379 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs73196305 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73196309 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73196310 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73196312 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73196332 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73196334 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73196336 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73196341 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73196349 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73196352 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73198215 | 0.92[EUR][1000 genomes] |
| rs73198230 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916862 | chr12:86837694-87718558 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1054581 | chr12:87510821-87669648 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv427918 | chr12:87647585-87786660 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:87649200-87653000 | Weak transcription | Muscle Satellite Cultured Cells | -- |
