Variant report
| Variant | rs55723339 |
|---|---|
| Chromosome Location | chr8:50654101-50654102 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs55997094 | 1.00[AMR][1000 genomes] |
| rs56030355 | 1.00[AMR][1000 genomes] |
| rs56051620 | 1.00[AMR][1000 genomes] |
| rs56192524 | 1.00[AMR][1000 genomes] |
| rs56260741 | 1.00[AMR][1000 genomes] |
| rs59699138 | 1.00[AMR][1000 genomes] |
| rs60167016 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60486347 | 1.00[AMR][1000 genomes] |
| rs73675914 | 1.00[AMR][1000 genomes] |
| rs73675915 | 1.00[AMR][1000 genomes] |
| rs73675916 | 1.00[AMR][1000 genomes] |
| rs73675919 | 1.00[AMR][1000 genomes] |
| rs73676015 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73676016 | 1.00[AMR][1000 genomes] |
| rs73676020 | 1.00[AMR][1000 genomes] |
| rs73676021 | 1.00[AMR][1000 genomes] |
| rs73676024 | 1.00[AMR][1000 genomes] |
| rs73676026 | 1.00[AMR][1000 genomes] |
| rs73676028 | 1.00[AMR][1000 genomes] |
| rs73677711 | 1.00[AMR][1000 genomes] |
| rs73677713 | 1.00[AMR][1000 genomes] |
| rs73677738 | 1.00[AMR][1000 genomes] |
| rs73677739 | 1.00[AMR][1000 genomes] |
| rs73677740 | 1.00[AMR][1000 genomes] |
| rs73677743 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73680243 | 1.00[AMR][1000 genomes] |
| rs73680244 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv917031 | chr8:50207246-50709286 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv2759612 | chr8:50415233-50657352 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv2758157 | chr8:50415863-50657352 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | esv3353749 | chr8:50530807-51139242 | Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:50651800-50654200 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 2 | chr8:50653600-50654600 | Enhancers | HMEC | breast |
