Variant report

Variant	rs73677738
Chromosome Location	chr8:50631138-50631139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs55710254	1.00[AMR][1000 genomes]
rs55723339	1.00[AMR][1000 genomes]
rs55786963	1.00[AMR][1000 genomes]
rs55997094	1.00[AMR][1000 genomes]
rs56030355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56051620	1.00[AMR][1000 genomes]
rs56192524	1.00[AMR][1000 genomes]
rs56260741	1.00[AMR][1000 genomes]
rs57326579	1.00[AMR][1000 genomes]
rs57519842	1.00[AMR][1000 genomes]
rs59130402	1.00[AMR][1000 genomes]
rs59699138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60167016	1.00[AMR][1000 genomes]
rs60486347	1.00[AMR][1000 genomes]
rs61660606	1.00[AMR][1000 genomes]
rs73675914	1.00[AMR][1000 genomes]
rs73675915	1.00[AMR][1000 genomes]
rs73675916	1.00[AMR][1000 genomes]
rs73675919	1.00[AMR][1000 genomes]
rs73676015	1.00[AMR][1000 genomes]
rs73676016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73676020	1.00[AMR][1000 genomes]
rs73676021	1.00[AMR][1000 genomes]
rs73676024	1.00[AMR][1000 genomes]
rs73676026	1.00[AMR][1000 genomes]
rs73676028	1.00[AMR][1000 genomes]
rs73677711	1.00[AMR][1000 genomes]
rs73677713	1.00[AMR][1000 genomes]
rs73677739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677743	1.00[AMR][1000 genomes]
rs73679585	1.00[AMR][1000 genomes]
rs73679746	1.00[AMR][1000 genomes]
rs73679747	1.00[AMR][1000 genomes]
rs73679748	1.00[AMR][1000 genomes]
rs73679749	1.00[AMR][1000 genomes]
rs73679750	1.00[AMR][1000 genomes]
rs73679751	1.00[AMR][1000 genomes]
rs73679752	1.00[AMR][1000 genomes]
rs73679753	1.00[AMR][1000 genomes]
rs73680243	1.00[AMR][1000 genomes]
rs73680244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2759612	chr8:50415233-50657352	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2758157	chr8:50415863-50657352	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv890863	chr8:50430756-50639293	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50626600-50635200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:50629000-50633800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:50630400-50633000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:50630600-50631400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr8:50630800-50631200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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