Variant report

Variant	rs73676026
Chromosome Location	chr8:50731498-50731499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55723339	1.00[AMR][1000 genomes]
rs55997094	1.00[AMR][1000 genomes]
rs56030355	1.00[AMR][1000 genomes]
rs56051620	1.00[AMR][1000 genomes]
rs56192524	1.00[AMR][1000 genomes]
rs56260741	1.00[AMR][1000 genomes]
rs59699138	1.00[AMR][1000 genomes]
rs60167016	1.00[AMR][1000 genomes]
rs73676015	1.00[AMR][1000 genomes]
rs73676016	1.00[AMR][1000 genomes]
rs73676020	1.00[AMR][1000 genomes]
rs73676021	1.00[AMR][1000 genomes]
rs73676024	1.00[AMR][1000 genomes]
rs73676028	1.00[AMR][1000 genomes]
rs73677711	1.00[AMR][1000 genomes]
rs73677713	1.00[AMR][1000 genomes]
rs73677738	1.00[AMR][1000 genomes]
rs73677739	1.00[AMR][1000 genomes]
rs73677740	1.00[AMR][1000 genomes]
rs73677743	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50727200-50732600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:50729800-50732200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:50729800-50734600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:50729800-50735200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr8:50730000-50734200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:50730000-50735000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:50730000-50735200	Weak transcription	NH-A	brain
8	chr8:50730200-50735200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:50730800-50735200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:50731000-50732000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:50731000-50732000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:50731200-50734800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:50731200-50735400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:50731400-50735200	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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