Variant report

Variant	rs73676020
Chromosome Location	chr8:50708643-50708644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55723339	1.00[AMR][1000 genomes]
rs55997094	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56030355	1.00[AMR][1000 genomes]
rs56051620	1.00[AMR][1000 genomes]
rs56192524	1.00[AMR][1000 genomes]
rs56260741	1.00[AMR][1000 genomes]
rs59699138	1.00[AMR][1000 genomes]
rs60167016	1.00[AMR][1000 genomes]
rs60486347	1.00[AMR][1000 genomes]
rs73676014	0.80[AFR][1000 genomes]
rs73676015	1.00[AMR][1000 genomes]
rs73676016	1.00[AMR][1000 genomes]
rs73676021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73676024	1.00[AMR][1000 genomes]
rs73676026	1.00[AMR][1000 genomes]
rs73676028	1.00[AMR][1000 genomes]
rs73677711	1.00[AMR][1000 genomes]
rs73677713	1.00[AMR][1000 genomes]
rs73677738	1.00[AMR][1000 genomes]
rs73677739	1.00[AMR][1000 genomes]
rs73677740	1.00[AMR][1000 genomes]
rs73677743	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50693200-50719600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:50706800-50724000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:50707400-50709600	Enhancers	Hela-S3	cervix
4	chr8:50707400-50711000	Enhancers	HMEC	breast
5	chr8:50707800-50712800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:50708000-50708800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:50708000-50709000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:50708000-50711000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:50708200-50709200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:50708200-50710400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr8:50708200-50710800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr8:50708400-50708800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:50708600-50709400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:50708600-50717000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links