Variant report

Variant	rs56260741
Chromosome Location	chr8:50728345-50728346
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55723339	1.00[AMR][1000 genomes]
rs55997094	1.00[AMR][1000 genomes]
rs56030355	1.00[AMR][1000 genomes]
rs56051620	1.00[AMR][1000 genomes]
rs56192524	1.00[AMR][1000 genomes]
rs59699138	1.00[AMR][1000 genomes]
rs60167016	1.00[AMR][1000 genomes]
rs73676015	1.00[AMR][1000 genomes]
rs73676016	1.00[AMR][1000 genomes]
rs73676020	1.00[AMR][1000 genomes]
rs73676021	1.00[AMR][1000 genomes]
rs73676024	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73676026	1.00[AMR][1000 genomes]
rs73676028	1.00[AMR][1000 genomes]
rs73677711	1.00[AMR][1000 genomes]
rs73677713	1.00[AMR][1000 genomes]
rs73677738	1.00[AMR][1000 genomes]
rs73677739	1.00[AMR][1000 genomes]
rs73677740	1.00[AMR][1000 genomes]
rs73677743	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50725000-50729400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:50725200-50728400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:50725200-50729000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:50725200-50729000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr8:50725200-50729200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:50725200-50729400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:50725400-50729200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:50725800-50728600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:50725800-50728600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr8:50726000-50728400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr8:50727200-50732600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:50727600-50728600	Weak transcription	NHDF-Ad	bronchial
13	chr8:50728200-50729000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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