Variant report

Variant	rs55843256
Chromosome Location	chr4:54523173-54523174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr4:54522734-54523175	MCF10A-Er-Src	breast:	n/a	chr4:54523128-54523136
2	ELK1	chr4:54523023-54523349	K562	blood:	n/a	n/a
3	SRF	chr4:54523024-54523239	K562	blood:	n/a	chr4:54523149-54523163 chr4:54523152-54523169 chr4:54523151-54523164 chr4:54523152-54523163 chr4:54523149-54523166 chr4:54523153-54523162 chr4:54523148-54523166 chr4:54523150-54523165 chr4:54523151-54523162 chr4:54523151-54523164 chr4:54523148-54523162
4	FOS	chr4:54522832-54523175	MCF10A-Er-Src	breast:	n/a	chr4:54522994-54523003 chr4:54522993-54523002
5	FOS	chr4:54522829-54523175	MCF10A-Er-Src	breast:	n/a	chr4:54522994-54523003 chr4:54522993-54523002
6	ELK4	chr4:54522957-54523271	Hela-S3	cervix:	n/a	n/a
7	SRF	chr4:54523009-54523296	K562	blood:	n/a	chr4:54523149-54523163 chr4:54523152-54523169 chr4:54523151-54523164 chr4:54523152-54523163 chr4:54523149-54523166 chr4:54523153-54523162 chr4:54523148-54523166 chr4:54523150-54523165 chr4:54523151-54523162 chr4:54523151-54523164 chr4:54523148-54523162

Variant related genes	Relation type
ENSG00000249341	TF binding region
LNX1	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4864806	0.91[EUR][1000 genomes]
rs56314005	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62323674	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62323675	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62323676	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62323677	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62323679	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62323680	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62323681	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62323682	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62325510	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73250977	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73250980	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54517600-54523200	Weak transcription	Spleen	Spleen
2	chr4:54518000-54523200	Weak transcription	HSMM	muscle
3	chr4:54519400-54523600	Enhancers	Fetal Muscle Leg	muscle
4	chr4:54519600-54523400	Enhancers	NHLF	lung
5	chr4:54520200-54524400	Weak transcription	Ovary	ovary
6	chr4:54520800-54524000	Weak transcription	Fetal Heart	heart
7	chr4:54521000-54524200	Weak transcription	Fetal Stomach	stomach
8	chr4:54521600-54523400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:54522000-54524600	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:54522200-54526000	Weak transcription	Gastric	stomach
11	chr4:54522200-54526000	Weak transcription	Right Atrium	heart
12	chr4:54522400-54525400	Weak transcription	Stomach Mucosa	stomach
13	chr4:54522800-54523200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:54522800-54523200	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr4:54522800-54523200	Flanking Active TSS	Osteobl	bone
16	chr4:54522800-54523400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:54522800-54523400	Flanking Active TSS	NHDF-Ad	bronchial
18	chr4:54523000-54523200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:54523000-54523200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:54523000-54523200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr4:54523000-54523200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:54523000-54523200	Enhancers	NHEK	skin
23	chr4:54523000-54523400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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