Variant report

Variant	rs62323681
Chromosome Location	chr4:54548347-54548348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4864806	0.82[EUR][1000 genomes]
rs55843256	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56314005	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62323674	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62323675	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62323676	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62323677	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62323679	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323682	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62325510	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73250977	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73250980	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54543200-54550400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:54545800-54548400	Weak transcription	Fetal Stomach	stomach
3	chr4:54547600-54549600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:54547600-54549600	Enhancers	NHLF	lung
5	chr4:54547600-54553000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:54547800-54549200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:54547800-54549400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:54547800-54550800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:54547800-54556000	Enhancers	NHDF-Ad	bronchial
10	chr4:54548000-54549200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr4:54548000-54549400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:54548000-54549400	Enhancers	Osteobl	bone
13	chr4:54548200-54548800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:54548200-54549200	Enhancers	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links