Variant report

Variant	rs62325510
Chromosome Location	chr4:54506784-54506785
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54506137..54508059-chr4:54527992..54529593,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs4864806	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55843256	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56314005	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323674	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62323675	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62323676	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62323677	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62323679	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62323680	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62323681	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62323682	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6554123	0.86[AFR][1000 genomes]
rs73250977	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73250980	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54494600-54507000	Weak transcription	Right Ventricle	heart
2	chr4:54501400-54507000	Weak transcription	Left Ventricle	heart
3	chr4:54501400-54507000	Weak transcription	Lung	lung
4	chr4:54501400-54510800	Weak transcription	Right Atrium	heart
5	chr4:54501600-54507000	Weak transcription	Fetal Intestine Large	intestine
6	chr4:54502200-54507000	Weak transcription	Gastric	stomach
7	chr4:54502800-54507000	Weak transcription	Pancreas	Pancrea
8	chr4:54502800-54507600	Weak transcription	Adipose Nuclei	Adipose
9	chr4:54505600-54507600	Enhancers	GM12878-XiMat	blood
10	chr4:54505600-54508400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:54505800-54507400	Enhancers	Esophagus	oesophagus
12	chr4:54505800-54508000	Enhancers	Fetal Heart	heart
13	chr4:54506200-54507800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:54506200-54508200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr4:54506400-54507200	Enhancers	Placenta	Placenta
16	chr4:54506400-54507200	Enhancers	Fetal Stomach	stomach
17	chr4:54506400-54507400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:54506400-54507800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr4:54506400-54507800	Enhancers	Brain Hippocampus Middle	brain
20	chr4:54506400-54507800	Enhancers	Stomach Mucosa	stomach
21	chr4:54506400-54508000	Enhancers	Fetal Lung	lung
22	chr4:54506600-54506800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:54506600-54507200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr4:54506600-54507200	Enhancers	Rectal Mucosa Donor 31	rectum

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