Variant report

Variant	rs62323679
Chromosome Location	chr4:54543809-54543810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4864806	0.84[EUR][1000 genomes]
rs55843256	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56314005	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62323674	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62323675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62323676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62323677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62323680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323681	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323682	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62325510	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73250977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73250980	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3449865	chr4:54541828-54543952	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54543200-54547800	Weak transcription	NHDF-Ad	bronchial
2	chr4:54543200-54550400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:54543400-54545000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:54543400-54547600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:54543400-54548000	Weak transcription	Osteobl	bone
6	chr4:54543600-54545600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:54543600-54547800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:54543600-54548000	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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