Variant report

Variant	rs62323682
Chromosome Location	chr4:54550174-54550175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55843256	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56314005	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62323674	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62323675	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62323676	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62323677	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62323679	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62323680	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62323681	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62325510	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73250977	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73250980	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54543200-54550400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:54547600-54553000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:54547800-54550800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:54547800-54556000	Enhancers	NHDF-Ad	bronchial
5	chr4:54549000-54552000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:54549200-54551600	Enhancers	Fetal Stomach	stomach
7	chr4:54549200-54552600	Weak transcription	NH-A	brain
8	chr4:54549200-54552800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:54549200-54552800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:54549400-54552600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:54549400-54552600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:54549400-54552600	Weak transcription	Osteobl	bone
13	chr4:54549600-54550200	Weak transcription	NHLF	lung
14	chr4:54550000-54551000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:54550000-54551800	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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